Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P16
         (883 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyce...   145   6e-36
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    37   0.003
SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyce...    29   1.2  

>SPBC29A3.04 |rpl8||60S ribosomal protein L7a |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 259

 Score =  145 bits (352), Expect = 6e-36
 Identities = 77/158 (48%), Positives = 89/158 (56%), Gaps = 1/158 (0%)
 Frame = +2

Query: 221 NPLFEXXPKXFAIGXGXQPTRDLSRFVXWPXYIRIQRQKAVLQRRLKVPPPINQFTQTLD 400
           NPLF   P+ F IG   QP RDLSRFV WP YIR+QR++ +L  RLKVPP I QF +TLD
Sbjct: 24  NPLFVSRPRSFGIGQDIQPKRDLSRFVKWPEYIRLQRRRKILNLRLKVPPAIAQFQKTLD 83

Query: 401 XXTAKGLFKXLEXYXPETEAAXKXXL-RXXXXXXXXXXXXXXXXRPNTIRSGTNTVXXXX 577
             TA  +FK L  Y PET A  K  L                  +P  ++ G N V    
Sbjct: 84  KNTATQVFKLLNKYRPETAAEKKQRLVAEAEAVANGKSAQDVSKKPYNVKYGLNHVVALI 143

Query: 578 XXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXVK 691
                    IA DVDPIELV+FLPALC+KMGVPY  VK
Sbjct: 144 EAKKAKLVLIASDVDPIELVVFLPALCKKMGVPYAIVK 181


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = +2

Query: 542 IRSGTNTVXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXVKGXSA 703
           +R G N               +A D +PIE++L LP LC    VPY  V   +A
Sbjct: 32  LRKGANEATKTLNRGISEFIVMAADTEPIEILLHLPLLCEDKNVPYVFVPSKAA 85


>SPAC1782.10c |nhp2||RNA-binding protein Nhp2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 154

 Score = 28.7 bits (61), Expect = 1.2
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 605 IAHDVDPIELVLFLPALCRKMGVPY 679
           +A D+ P++++  +P LC    VPY
Sbjct: 75  LAGDISPMDVISHIPVLCEDNNVPY 99


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,340,120
Number of Sequences: 5004
Number of extensions: 33157
Number of successful extensions: 68
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 67
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)