Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_P16
(883 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 160 1e-39
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 142 2e-34
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 104 7e-23
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 85 8e-17
Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical pr... 36 0.029
AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine r... 30 2.5
AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical ... 29 4.4
U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical pr... 29 5.8
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 160 bits (389), Expect = 1e-39
Identities = 77/161 (47%), Positives = 96/161 (59%)
Frame = +2
Query: 221 NPLFEXXPKXFAIGXGXQPTRDLSRFVXWPXYIRIQRQKAVLQRRLKVPPPINQFTQTLD 400
NPLFE + F IG QP +D++RFV WP YIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 401 XXTAKGLFKXLEXYXPETEAAXKXXLRXXXXXXXXXXXXXXXXRPNTIRSGTNTVXXXXX 580
+A+ FK L+ Y PE+ A K LR RPNT+R G NT+
Sbjct: 90 SQSARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVTKRPNTVRHGVNTITRLVE 149
Query: 581 XXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXVKGXSA 703
IAHDV+P+E+VL LPALCRK VPY +KG ++
Sbjct: 150 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKAS 190
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 142 bits (345), Expect = 2e-34
Identities = 74/161 (45%), Positives = 93/161 (57%)
Frame = +2
Query: 221 NPLFEXXPKXFAIGXGXQPTRDLSRFVXWPXYIRIQRQKAVLQRRLKVPPPINQFTQTLD 400
NPLFE + F IG QP +D++RFV WP YIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 30 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 89
Query: 401 XXTAKGLFKXLEXYXPETEAAXKXXLRXXXXXXXXXXXXXXXXRPNTIRSGTNTVXXXXX 580
+A+ FK L+ Y PE+ K RPNT+R G NT+
Sbjct: 90 SQSARQAFKLLDKYRPESTEVTK--------------------RPNTVRHGVNTITRLVE 129
Query: 581 XXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXVKGXSA 703
IAHDV+P+E+VL LPALCRK VPY +KG ++
Sbjct: 130 TRRAQLVLIAHDVNPLEIVLHLPALCRKYNVPYAIIKGKAS 170
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 104 bits (250), Expect = 7e-23
Identities = 48/87 (55%), Positives = 59/87 (67%)
Frame = +2
Query: 221 NPLFEXXPKXFAIGXGXQPTRDLSRFVXWPXYIRIQRQKAVLQRRLKVPPPINQFTQTLD 400
NPLFE + F IG QP +D++RFV WP YIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
Query: 401 XXTAKGLFKXLEXYXPETEAAXKXXLR 481
+A+ FK L+ Y PE+ A K LR
Sbjct: 193 SHSARQAFKLLDKYRPESSEAKKNRLR 219
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 84.6 bits (200), Expect = 8e-17
Identities = 37/60 (61%), Positives = 44/60 (73%)
Frame = +2
Query: 221 NPLFEXXPKXFAIGXGXQPTRDLSRFVXWPXYIRIQRQKAVLQRRLKVPPPINQFTQTLD 400
NPLFE + F IG QP +D++RFV WP YIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 133 NPLFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>Z49911-4|CAA90127.1| 128|Caenorhabditis elegans Hypothetical
protein M28.5 protein.
Length = 128
Score = 36.3 bits (80), Expect = 0.029
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +2
Query: 542 IRSGTNTVXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXVKGXSA 703
++ G N +A D +P+E++L LP LC VPY V+ +A
Sbjct: 35 LKKGANEATKTLNRGISEIIVMAADAEPLEILLHLPLLCEDKNVPYVFVRSKAA 88
>AC006769-16|AAF60588.2| 338|Caenorhabditis elegans Serpentine
receptor, class j protein20 protein.
Length = 338
Score = 29.9 bits (64), Expect = 2.5
Identities = 13/31 (41%), Positives = 20/31 (64%)
Frame = +2
Query: 617 VDPIELVLFLPALCRKMGVPYCXVKGXSASV 709
+DP+ ++L LPAL R++ P +G S SV
Sbjct: 294 LDPLAIILLLPALRRRLPNPIRKYRGNSVSV 324
>AL023844-2|CAA19527.1| 163|Caenorhabditis elegans Hypothetical
protein Y48A6B.3 protein.
Length = 163
Score = 29.1 bits (62), Expect = 4.4
Identities = 12/50 (24%), Positives = 22/50 (44%)
Frame = +2
Query: 539 TIRSGTNTVXXXXXXXXXXXXXIAHDVDPIELVLFLPALCRKMGVPYCXV 688
T+R G V +A +V PI++ +P +C + +PY +
Sbjct: 68 TLREGIKDVQKELRRNEKGICILAGNVSPIDVYSHIPGICEEKEIPYVYI 117
>U23486-3|AAL38955.1| 529|Caenorhabditis elegans Hypothetical
protein F07F6.4 protein.
Length = 529
Score = 28.7 bits (61), Expect = 5.8
Identities = 12/17 (70%), Positives = 14/17 (82%)
Frame = +3
Query: 369 LRSTNLPRHWTXLQLRA 419
+RSTNL +WT LQLRA
Sbjct: 65 VRSTNLDTNWTWLQLRA 81
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,616,741
Number of Sequences: 27780
Number of extensions: 206529
Number of successful extensions: 381
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 362
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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