Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P12
         (889 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    54   6e-06
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    53   1e-05
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    51   5e-05
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    50   8e-05
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    46   0.001
UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1; ...    42   0.016
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.021
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.11 
UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer ariet...    33   7.4  

>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 53.6 bits (123), Expect = 6e-06
 Identities = 24/26 (92%), Positives = 24/26 (92%)
 Frame = +3

Query: 609 TSITKIDAQVXGGETRQDYKDTXRFP 686
           TSITKIDAQV GGETRQDYKDT RFP
Sbjct: 24  TSITKIDAQVRGGETRQDYKDTRRFP 49



 Score = 50.4 bits (115), Expect = 6e-05
 Identities = 24/45 (53%), Positives = 25/45 (55%)
 Frame = +1

Query: 730 LTDTCPPFSLREAWXFLIXXXVGISXRXXVVRSXLGXVPHPPXXP 864
           L DTCPPFSLREAW FLI   VGIS R            +PP  P
Sbjct: 64  LPDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSP 108



 Score = 40.3 bits (90), Expect = 0.064
 Identities = 38/117 (32%), Positives = 40/117 (34%), Gaps = 2/117 (1%)
 Frame = +2

Query: 542 SKRPGTVKRPXCWRFSIGSAPLNEHHKNRRSSXRWRNPTGL*RYXAFXXXXXXXCALLFR 721
           SK+  T       RFSIGSAPL    K                   F       CALLFR
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPS-CALLFR 60

Query: 722 XCRLRIPVRLSPFGKRGXFSXXXX*VSXFGXX--SXAPXWAXCPTPXSXRXXXPYPV 886
            CRL  P    PF  R  +               S AP WA C  P       PYPV
Sbjct: 61  PCRL--PDTCPPFSLREAWRFLIAHAVGISVRCRSFAPSWAVCTNPPFSPTAAPYPV 115


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 52.8 bits (121), Expect = 1e-05
 Identities = 32/51 (62%), Positives = 33/51 (64%)
 Frame = -2

Query: 606 RGAEPMEKRQQXGLFTVPGLLLAFCSHVLSCVIPLILWITVLPPLSEXIPL 454
           RGAEPMEKR +  L  V   LL  CS  L    PLILWITVLPPLSE  PL
Sbjct: 4   RGAEPMEKRLRCWLLPVLCFLLT-CSFRL---YPLILWITVLPPLSELTPL 50


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 50.8 bits (116), Expect = 5e-05
 Identities = 22/26 (84%), Positives = 23/26 (88%)
 Frame = +3

Query: 609 TSITKIDAQVXGGETRQDYKDTXRFP 686
           TSITK DAQ+ GGETRQDYKDT RFP
Sbjct: 60  TSITKSDAQISGGETRQDYKDTRRFP 85


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 50.0 bits (114), Expect = 8e-05
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +1

Query: 346 SALMNRPTXGERRFAYWALFRFL 414
           +ALMNRPT GERRFAYWALFRFL
Sbjct: 25  AALMNRPTRGERRFAYWALFRFL 47


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 46.4 bits (105), Expect = 0.001
 Identities = 20/26 (76%), Positives = 21/26 (80%)
 Frame = +3

Query: 609 TSITKIDAQVXGGETRQDYKDTXRFP 686
           TSI K DAQ+ GGETRQDYKD  RFP
Sbjct: 92  TSIAKSDAQISGGETRQDYKDPRRFP 117



 Score = 36.7 bits (81), Expect = 0.79
 Identities = 16/18 (88%), Positives = 16/18 (88%)
 Frame = +1

Query: 418 SLTRCARSFGCGERYXLT 471
           SLTR ARSFGCGERY LT
Sbjct: 41  SLTRYARSFGCGERYRLT 58


>UniRef50_A6NX90 Cluster: Putative uncharacterized protein; n=1;
           Bacteroides capillosus ATCC 29799|Rep: Putative
           uncharacterized protein - Bacteroides capillosus ATCC
           29799
          Length = 37

 Score = 42.3 bits (95), Expect = 0.016
 Identities = 20/25 (80%), Positives = 20/25 (80%)
 Frame = +3

Query: 735 GYLSAFLPSGSVALSHXPXXRYLXS 809
           GYLSAFLPSGSVALSH    RYL S
Sbjct: 12  GYLSAFLPSGSVALSHSSRCRYLSS 36


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 41.9 bits (94), Expect = 0.021
 Identities = 17/19 (89%), Positives = 18/19 (94%)
 Frame = +1

Query: 151 DPDMIRYXDEFGQTTTKMQ 207
           DPDMIRY DEFGQTTT+MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.5 bits (88), Expect = 0.11
 Identities = 18/18 (100%), Positives = 18/18 (100%)
 Frame = -1

Query: 400 APNTQTASPRALADSLMQ 347
           APNTQTASPRALADSLMQ
Sbjct: 331 APNTQTASPRALADSLMQ 348


>UniRef50_Q8GUF1 Cluster: Reverse transcriptase; n=1; Cicer
           arietinum|Rep: Reverse transcriptase - Cicer arietinum
           (Chickpea) (Garbanzo)
          Length = 37

 Score = 33.5 bits (73), Expect = 7.4
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +2

Query: 482 NTVIHRIRGITQERTCE 532
           NTVIH  +GITQERTCE
Sbjct: 21  NTVIHXNQGITQERTCE 37


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,045,417
Number of Sequences: 1657284
Number of extensions: 9878252
Number of successful extensions: 17921
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 17474
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17913
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 79932179145
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)