Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_P11
(1388 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical pr... 36 0.090
AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily a... 32 0.84
AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily a... 32 0.84
Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical pr... 32 1.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 31 2.6
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 31 2.6
U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical pr... 30 3.4
AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical ... 30 3.4
U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequen... 29 5.9
AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical ... 29 7.8
>U41538-2|AAG00010.1| 997|Caenorhabditis elegans Hypothetical
protein R04E5.8a protein.
Length = 997
Score = 35.5 bits (78), Expect = 0.090
Identities = 28/87 (32%), Positives = 30/87 (34%)
Frame = +2
Query: 560 PPXPPXXSPXPSXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXP 739
P PP SP P SP R TPP P PRN P P PPP
Sbjct: 147 PRTPPPRSPPPRRPPMT--PPSPQRRPPRTPPSP---EPRNPPRTPPSPIPPPPPRLNSH 201
Query: 740 XRTTXXHPRTXXXRQAPARVKNXSXLP 820
R R R AP ++ S P
Sbjct: 202 DRRALRARRPMVHRPAPYGRRSISQGP 228
Score = 29.9 bits (64), Expect = 4.5
Identities = 18/58 (31%), Positives = 20/58 (34%)
Frame = +2
Query: 650 PPGPXXGSPRNXPAXSPXXEPPPXXPTXXPXRTTXXHPRTXXXRQAPARVKNXSXLPP 823
PP P PR P SP PP P P R P + R P + PP
Sbjct: 139 PPPPPPRVPRTPPPRSPPPRRPPMTP-PSPQRRPPRTPPSPEPRNPPRTPPSPIPPPP 195
>AF098500-3|ABD94103.1| 774|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform b protein.
Length = 774
Score = 32.3 bits (70), Expect = 0.84
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 635 RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXP 739
R T +PP P P + P P PPP PT P
Sbjct: 68 RPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRP 102
>AF098500-2|AAC67399.2| 996|Caenorhabditis elegans Temporarily
assigned gene nameprotein 343, isoform a protein.
Length = 996
Score = 32.3 bits (70), Expect = 0.84
Identities = 14/35 (40%), Positives = 16/35 (45%)
Frame = +2
Query: 635 RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXP 739
R T +PP P P + P P PPP PT P
Sbjct: 290 RPTESPPLPPPPLPLSNPPAKPTPPPPPPKPTIRP 324
>Z72514-1|CAA96674.1| 428|Caenorhabditis elegans Hypothetical
protein T10B10.1 protein.
Length = 428
Score = 31.9 bits (69), Expect = 1.1
Identities = 23/94 (24%), Positives = 31/94 (32%), Gaps = 2/94 (2%)
Frame = +1
Query: 709 APPXXSHXLPX--PXXLXTPTXXXXTSSPGSGXKXXXPXPXXXLXTSXLPXYATPXLPSP 882
APP + P P T SP + P P + P Y +P PSP
Sbjct: 327 APPATTRPAPASQPPVREPETPDSGYPSPAP-QEPAHPSPSYPSPSYPSPSYPSPSYPSP 385
Query: 883 GXINAXXPSTXTXXXPSPXPHXLPXXGFRSXXPP 984
+ P+ P P P G+ + PP
Sbjct: 386 SYPSPSYPAEPAYSVPPPAKPEQPSGGYDAPSPP 419
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 30.7 bits (66), Expect = 2.6
Identities = 31/108 (28%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Frame = +2
Query: 560 PPXPPXXSPX---PSXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPA-XSP----XXEPP 715
PP PP SP SP T +PP P GSP PA SP PP
Sbjct: 239 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 298
Query: 716 PXXPTXXPXRTTXXHPRTXXXRQAPARVKNXSXLPPXEXWXXRNSPXT 859
P P T P PA + P + SP T
Sbjct: 299 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 346
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 30.7 bits (66), Expect = 2.6
Identities = 31/108 (28%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Frame = +2
Query: 560 PPXPPXXSPX---PSXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPA-XSP----XXEPP 715
PP PP SP SP T +PP P GSP PA SP PP
Sbjct: 260 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 319
Query: 716 PXXPTXXPXRTTXXHPRTXXXRQAPARVKNXSXLPPXEXWXXRNSPXT 859
P P T P PA + P + SP T
Sbjct: 320 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 367
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 30.7 bits (66), Expect = 2.6
Identities = 31/108 (28%), Positives = 34/108 (31%), Gaps = 8/108 (7%)
Frame = +2
Query: 560 PPXPPXXSPX---PSXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPA-XSP----XXEPP 715
PP PP SP SP T +PP P GSP PA SP PP
Sbjct: 245 PPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGSPP 304
Query: 716 PXXPTXXPXRTTXXHPRTXXXRQAPARVKNXSXLPPXEXWXXRNSPXT 859
P P T P PA + P + SP T
Sbjct: 305 PPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPPPPRQKRQAPERSPPT 352
>U10438-9|AAU87834.1| 616|Caenorhabditis elegans Hypothetical
protein B0280.13 protein.
Length = 616
Score = 30.3 bits (65), Expect = 3.4
Identities = 16/56 (28%), Positives = 20/56 (35%)
Frame = +2
Query: 560 PPXPPXXSPXPSXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXP 727
PP P +P P I + +PP P P P+ P PPP P
Sbjct: 466 PPTTPKPAPPPPSRIPNPSPSPQPAEVSKSPPPPPPLPPIATPSSVPPPPPPPPPP 521
>AF039052-9|AAF98625.1| 302|Caenorhabditis elegans Hypothetical
protein T22D1.2 protein.
Length = 302
Score = 30.3 bits (65), Expect = 3.4
Identities = 18/57 (31%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
Frame = +2
Query: 560 PPXPPXXSPXP-SXXIXX*EXXSPX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXP 727
PP PP P S P + T TPP P G P++ A PP P
Sbjct: 168 PPPPPTGEPQDLSTEGNASRRPPPPPKGTGTPPPPPTGEPQDLSAEGYASRRPPPPP 224
Score = 29.1 bits (62), Expect = 7.8
Identities = 21/79 (26%), Positives = 25/79 (31%)
Frame = +2
Query: 626 PX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXPXRTTXXHPRTXXXRQAPARVKN 805
P + T TPP P G P++ PP P T P T + A N
Sbjct: 35 PPPKGTGTPPPPPTGEPQDLSGEGNASRRPPPPP---KGTGTPPPPPTGEPQDLSAEEGN 91
Query: 806 XSXLPPXEXWXXRNSPXTP 862
S PP P P
Sbjct: 92 ASRRPPPPPKGTGTPPPPP 110
>U41557-6|AAA83307.1| 589|Caenorhabditis elegans Collagen sequence
x-hybridizingprotein 1 protein.
Length = 589
Score = 29.5 bits (63), Expect = 5.9
Identities = 15/47 (31%), Positives = 18/47 (38%)
Frame = +2
Query: 626 PX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXPXRTTXXHPR 766
P R + PPGP S P+ +P P P P P PR
Sbjct: 62 PAPRPSGQPPGPQGPSDLPGPSGAPPGPPHPSGPPHRPHPHPSRRPR 108
>AC024824-3|AAK85501.1| 543|Caenorhabditis elegans Hypothetical
protein Y55B1BR.1 protein.
Length = 543
Score = 29.1 bits (62), Expect = 7.8
Identities = 19/56 (33%), Positives = 21/56 (37%)
Frame = +2
Query: 623 SPX*RXTXTPPGPXXGSPRNXPAXSPXXEPPPXXPTXXPXRTTXXHPRTXXXRQAP 790
SP R + P G+PR P PPP P P R H R RQ P
Sbjct: 105 SPRKRFSSVETNP--GTPRIY--LPPPPRPPPVPPLSPPERPDIPHARVLPQRQKP 156
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,022,648
Number of Sequences: 27780
Number of extensions: 153141
Number of successful extensions: 432
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 389
length of database: 12,740,198
effective HSP length: 84
effective length of database: 10,406,678
effective search space used: 3933724284
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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