Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P11
         (1388 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       26   0.89 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   8.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 25.8 bits (54), Expect = 0.89
 Identities = 11/31 (35%), Positives = 13/31 (41%)
 Frame = +2

Query: 647 TPPGPXXGSPRNXPAXSPXXEPPPXXPTXXP 739
           +P  P  GSP N     P   PP   P+  P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 4.8
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +2

Query: 623 SPX*RXTXTPPGPXXGSPRNXPAXSPXXEPP 715
           SP      +PP P  G P   P  +P  + P
Sbjct: 30  SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.6 bits (46), Expect = 8.3
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +2

Query: 668  GSPRNXPAXSPXXEPPPXXP 727
            GS RN P  S   EPPP  P
Sbjct: 1846 GSARNIPV-SGSPEPPPPPP 1864


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,118
Number of Sequences: 438
Number of extensions: 2413
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 60
effective length of database: 120,063
effective search space used: 48265326
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)