Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P09
         (847 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar...    33   0.051
SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    29   0.63 
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    28   1.4  
SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence orphan|Schizos...    28   1.9  
SPBC14F5.12c |cbh2||centromere binding protein Cbh2|Schizosaccha...    26   7.7  
SPBC947.11c |elg1||DNA replication factor C complex subunit Elg1...    26   7.7  

>SPCC1393.08 |||transcription factor, zf-GATA type
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 33.1 bits (72), Expect = 0.051
 Identities = 18/44 (40%), Positives = 22/44 (50%)
 Frame = +2

Query: 404 KPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQ 535
           K   PT PP      P  PTP++ LI TP PG++     F  SQ
Sbjct: 154 KTSEPT-PPFSYVQTPCIPTPSSALIDTPFPGALDSEFGFDESQ 196


>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 29.5 bits (63), Expect = 0.63
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 410 VHPTLPPNQIKPVPVYPTPATRLITTPGPGS 502
           ++P   P ++KP    PTPA  + T+P P S
Sbjct: 314 INPKRRPIEVKPAAPVPTPAPPVKTSPHPAS 344


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 18/44 (40%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
 Frame = +2

Query: 95  DLEKKAVTALVFRQHL---RECLVNMKIIGIVLLLVFYGSECRK 217
           DLEK    AL+    L   + CL   KI   + L  F G ECRK
Sbjct: 553 DLEKNITEALLTGDVLSAVKACLEEKKISEALFLSTFGGKECRK 596


>SPCC1742.01 ||SPCC1795.13, SPCPB16A4.07c|sequence
           orphan|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1563

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +2

Query: 380 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 538
           T LT   P   + T P       P YPT  T   T   PGSV   +T   S G
Sbjct: 252 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 303



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +2

Query: 380 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 538
           T LT   P   + T P       P YPT  T   T   PGSV   +T   S G
Sbjct: 330 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 381



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +2

Query: 380 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 538
           T LT   P   + T P       P YPT  T   T   PGSV   +T   S G
Sbjct: 408 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 459



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +2

Query: 380 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 538
           T LT   P   + T P       P YPT  T   T   PGSV   +T   S G
Sbjct: 486 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 537



 Score = 27.9 bits (59), Expect = 1.9
 Identities = 19/53 (35%), Positives = 21/53 (39%)
 Frame = +2

Query: 380 TALTPVAPKPVHPTLPPNQIKPVPVYPTPATRLITTPGPGSVQQLVTFYNSQG 538
           T LT   P   + T P       P YPT  T   T   PGSV   +T   S G
Sbjct: 564 TTLTTTVPHSGNETGPTTVYVETP-YPTTVTTTTTVGYPGSVTTTLTGAPSNG 615


>SPBC14F5.12c |cbh2||centromere binding protein
           Cbh2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 11/34 (32%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -1

Query: 403 RSYRR*SCH-DRFDLSWRHGCRSRLDNRRLCEWL 305
           R++R+ + H D  D  WR+   +R+    + EWL
Sbjct: 236 RAFRQANAHPDSMDFHWRYNGTARMTTSIMEEWL 269


>SPBC947.11c |elg1||DNA replication factor C complex subunit
           Elg1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 920

 Score = 25.8 bits (54), Expect = 7.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +2

Query: 224 KPIDKNANIDFINMEAGGARP 286
           K + KN+ I F++ E GG +P
Sbjct: 182 KSVKKNSEIKFVSEERGGTKP 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,003,172
Number of Sequences: 5004
Number of extensions: 57412
Number of successful extensions: 174
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)