Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P07
         (895 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomy...   158   1e-39
SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein L7|...   156   3e-39
SPAC664.06 |rpl703|rpl7|60S ribosomal protein L7|Schizosaccharom...   150   2e-37
SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium tra...    28   2.1  
SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomy...    26   6.3  

>SPBC18H10.12c |rpl701||60S ribosomal protein L7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 251

 Score =  158 bits (383), Expect = 1e-39
 Identities = 75/135 (55%), Positives = 94/135 (69%)
 Frame = +1

Query: 328 RAEQYVKEYRIKERDEIXLARXARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLF 507
           RAE Y  EYR  ER++I L R AR  GNYYVP E KL FVIRIRGIN + PK RK++QL 
Sbjct: 55  RAESYDAEYRKAEREQIELGRKARAEGNYYVPDETKLVFVIRIRGINNIPPKARKIMQLL 114

Query: 508 RLRQINNGVFVRLNKATVXMLRIAEPYLAWGXPNLQSVRXLVYXRGFXXLSGQXIPXXSN 687
           RL QINNGVFV+ NKAT  ML++ EPY+ +G PNL++VR L+Y RGF  ++ Q I    N
Sbjct: 115 RLIQINNGVFVKFNKATKEMLQVVEPYVTYGIPNLKTVRELLYKRGFGKVNKQRIALSDN 174

Query: 688 SIVXTRLHKXXIICV 732
           +I+   L K  I+ +
Sbjct: 175 AIIEAALGKYSILSI 189


>SPAC3H5.07 |rpl702|rpl7-2, rpl7, rpl7b|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score =  156 bits (379), Expect = 3e-39
 Identities = 73/135 (54%), Positives = 94/135 (69%)
 Frame = +1

Query: 328 RAEQYVKEYRIKERDEIXLARXARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLF 507
           RAE Y  EYR  ER++I LAR AR  GNY+VP E KL FV+RIRGIN + PK RK++QL 
Sbjct: 54  RAEAYEAEYRAAEREQIELARKARAEGNYFVPHEPKLIFVVRIRGINNIPPKARKIMQLL 113

Query: 508 RLRQINNGVFVRLNKATVXMLRIAEPYLAWGXPNLQSVRXLVYXRGFXXLSGQXIPXXSN 687
           RL QINNG+FV+ NKA   ML++ EPY+ +G PN ++VR L+Y RGF  ++ Q IP   N
Sbjct: 114 RLLQINNGIFVKFNKAIKEMLQVVEPYVTYGIPNHKTVRELIYKRGFGKVNKQRIPLSDN 173

Query: 688 SIVXTRLHKXXIICV 732
           +I+   L K  I+ V
Sbjct: 174 AIIEAALGKYSILSV 188


>SPAC664.06 |rpl703|rpl7|60S ribosomal protein
           L7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 249

 Score =  150 bits (364), Expect = 2e-37
 Identities = 70/137 (51%), Positives = 93/137 (67%)
 Frame = +1

Query: 322 FXRAEQYVKEYRIKERDEIXLARXARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQ 501
           F RAE ++  YR +ER+ I L R A+N+G+ +VP E KL FVIRI G+  + PK+RKVL+
Sbjct: 51  FKRAETFINNYRQRERERIRLNRSAKNKGDIFVPDETKLLFVIRIAGVKNMPPKIRKVLR 110

Query: 502 LFRLRQINNGVFVRLNKATVXMLRIAEPYLAWGXPNLQSVRXLVYXRGFXXLSGQXIPXX 681
           L RL +INN VFVR NKA   MLRI EPY+ +G PNL SVR L+Y RGF  ++GQ I   
Sbjct: 111 LLRLSRINNAVFVRNNKAVAQMLRIVEPYVMYGIPNLHSVRELIYKRGFGKINGQRIALS 170

Query: 682 SNSIVXTRLHKXXIICV 732
            N+++   L K  +I +
Sbjct: 171 DNALIEEALGKYDVISI 187


>SPACUNK4.07c |cta4|sev4, SPAPYUK71.01|P-type ATPase, calcium
            transporting Cta4 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1211

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +1

Query: 337  QYVKEYRIKERDEIXLARXARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRL 513
            Q V  + I  +        + N+G YY  G   +AFV  I G+ + SP++   LQL ++
Sbjct: 1114 QQVSTFAINYQGRPFREALSENKGMYY--GLLGIAFVA-IAGVTEFSPELNAKLQLVKM 1169


>SPAC20H4.10 |ufd2||ubiquitin-protein ligase E4 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1010

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 39  LPLXFCFFDNLTHVPAWXFASQHDGCDYRKE 131
           L + F  + NL + PA+  A  HDG  Y KE
Sbjct: 854 LSIIFDVYLNLCNEPAFVEAVAHDGRSYSKE 884


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,564,148
Number of Sequences: 5004
Number of extensions: 39038
Number of successful extensions: 54
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 450492750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)