Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P07
         (895 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal pro...   171   6e-43

>AF003139-2|AAB54165.1|  244|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 7 protein.
          Length = 244

 Score =  171 bits (416), Expect = 6e-43
 Identities = 83/177 (46%), Positives = 112/177 (63%)
 Frame = +1

Query: 202 LPAVPESVLKHXXXXXXXXXXXLQVTLXXXXXXXXXXXXXFXRAEQYVKEYRIKERDEIX 381
           +P VPE+VLK             Q  +             F RAE+YV+EYR  +++ + 
Sbjct: 7   VPQVPETVLKRRKQRADARTKAAQHKVTVAAKNKEKKTQYFKRAEKYVQEYRNAQKEGLR 66

Query: 382 LARXARNRGNYYVPGEAKLAFVIRIRGINQVSPKVRKVLQLFRLRQINNGVFVRLNKATV 561
           L R A  +G++YVP E K+AFV+RIRGINQ+ PK RK LQ+ RLRQINNGVFV+LNKAT+
Sbjct: 67  LKREAEAKGDFYVPAEHKVAFVVRIRGINQLHPKPRKALQILRLRQINNGVFVKLNKATL 126

Query: 562 XMLRIAEPYLAWGXPNLQSVRXLVYXRGFXXLSGQXIPXXSNSIVXTRLHKXXIICV 732
            +LRI EPY+AWG PN +++  L+Y RG+  + G  +P   N+IV   L K  IIC+
Sbjct: 127 PLLRIIEPYVAWGYPNNKTIHDLLYKRGYAKVDGNRVPITDNTIVEQSLGKFNIICL 183


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,645,391
Number of Sequences: 27780
Number of extensions: 238758
Number of successful extensions: 364
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 354
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 364
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2265843888
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)