Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P06
         (845 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000298-11|AAM97960.1|  518|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-10|AAM97961.1|  539|Caenorhabditis elegans Prion-like-(...    30   2.4  
AF000298-8|AAC48255.2|  524|Caenorhabditis elegans Prion-like-(q...    30   2.4  
AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical ...    29   3.1  
Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical pr...    29   4.2  
U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA bi...    29   4.2  
U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis def...    29   5.5  
U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis def...    29   5.5  
AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.    29   5.5  

>AF000298-11|AAM97960.1|  518|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform b protein.
          Length = 518

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 691 SPPPPXXXXXXPPGGGGXXXPPXA 620
           SPPPP      PP  GG   PP A
Sbjct: 271 SPPPPPTGSPPPPPAGGSPPPPRA 294


>AF000298-10|AAM97961.1|  539|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform c protein.
          Length = 539

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 691 SPPPPXXXXXXPPGGGGXXXPPXA 620
           SPPPP      PP  GG   PP A
Sbjct: 292 SPPPPPTGSPPPPPAGGSPPPPRA 315


>AF000298-8|AAC48255.2|  524|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
           isoform a protein.
          Length = 524

 Score = 29.9 bits (64), Expect = 2.4
 Identities = 12/24 (50%), Positives = 12/24 (50%)
 Frame = -2

Query: 691 SPPPPXXXXXXPPGGGGXXXPPXA 620
           SPPPP      PP  GG   PP A
Sbjct: 277 SPPPPPTGSPPPPPAGGSPPPPRA 300


>AF016446-1|AAC24166.1|   66|Caenorhabditis elegans Hypothetical
           protein C02E7.7 protein.
          Length = 66

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/32 (40%), Positives = 14/32 (43%)
 Frame = -2

Query: 715 GGXXXXXXSPPPPXXXXXXPPGGGGXXXPPXA 620
           GG      +PPPP        GGGG   PP A
Sbjct: 22  GGGGGCGCAPPPPPPACGCGGGGGGYAAPPPA 53


>Z46676-8|CAB60993.2|  388|Caenorhabditis elegans Hypothetical
           protein C08B11.5 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 688 PPPPXXXXXXPPGGGGXXXPP 626
           PPPP      PPG GG   PP
Sbjct: 317 PPPPPPSRFGPPGMGGMPPPP 337



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 594 PPPVXF*KXAXGGXXXPPPPG 656
           PPP  F     GG   PPPPG
Sbjct: 320 PPPSRFGPPGMGGMPPPPPPG 340


>U24189-3|AAC47514.1|  398|Caenorhabditis elegans RRM-type RNA
           binding protein protein.
          Length = 398

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 688 PPPPXXXXXXPPGGGGXXXPP 626
           PPPP      PPG GG   PP
Sbjct: 327 PPPPPPSRFGPPGMGGMPPPP 347



 Score = 28.3 bits (60), Expect = 7.3
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +3

Query: 594 PPPVXF*KXAXGGXXXPPPPG 656
           PPP  F     GG   PPPPG
Sbjct: 330 PPPSRFGPPGMGGMPPPPPPG 350


>U40187-5|AAS80343.1| 1437|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoformb protein.
          Length = 1437

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 715 GGXXXXXXSPPPPXXXXXXPPGGGGXXXPP 626
           GG       PPPP      PP  GG   PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>U40187-4|AAS80342.1| 1435|Caenorhabditis elegans Cytokinesis defect
           protein 1, isoforma protein.
          Length = 1435

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 715 GGXXXXXXSPPPPXXXXXXPPGGGGXXXPP 626
           GG       PPPP      PP  GG   PP
Sbjct: 733 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 762


>AF062008-1|AAC17501.1| 1018|Caenorhabditis elegans unknown protein.
          Length = 1018

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 12/30 (40%), Positives = 12/30 (40%)
 Frame = -2

Query: 715 GGXXXXXXSPPPPXXXXXXPPGGGGXXXPP 626
           GG       PPPP      PP  GG   PP
Sbjct: 316 GGLPPITGGPPPPPPPGGLPPISGGPPPPP 345


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,151,185
Number of Sequences: 27780
Number of extensions: 190789
Number of successful extensions: 510
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 436
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2098003600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)