Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P05
         (961 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       31   0.012
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    25   0.77 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.0  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              24   2.4  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    23   3.1  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    22   7.2  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 31.5 bits (68), Expect = 0.012
 Identities = 14/40 (35%), Positives = 14/40 (35%)
 Frame = +1

Query: 817 PPXXXPPPPPXPXPXPXPXXXXPPPXPXXPPPXPPPPXXP 936
           P    P P P P   P       PP P   PP   PP  P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAP 55



 Score = 29.5 bits (63), Expect = 0.047
 Identities = 14/45 (31%), Positives = 14/45 (31%)
 Frame = +1

Query: 790 PPPHXPXPXPPXXXPPPPPXPXPXPXPXXXXPPPXPXXPPPXPPP 924
           P    P P P     P  P     P P    PP  P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 29.1 bits (62), Expect = 0.063
 Identities = 15/34 (44%), Positives = 15/34 (44%), Gaps = 2/34 (5%)
 Frame = +3

Query: 666 PXPFP-LXPPXPXXPXPPPPXXXPPP-XPPXPPP 761
           P P P   P  P    PP P   PPP  PP  PP
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 27.9 bits (59), Expect = 0.14
 Identities = 12/36 (33%), Positives = 13/36 (36%)
 Frame = +3

Query: 831 PPPPPXPXPXPXTXXXXTXXXPPXPPPXPPPPXXPP 938
           P P P P   P      +   P   PP   PP  PP
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 26.2 bits (55), Expect = 0.44
 Identities = 13/40 (32%), Positives = 15/40 (37%), Gaps = 1/40 (2%)
 Frame = +3

Query: 819 PXPXPPPPPXP-XPXPXTXXXXTXXXPPXPPPXPPPPXXP 935
           P P P P   P  P   +    +   PP  PP  PP   P
Sbjct: 21  PGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.4 bits (53), Expect = 0.77
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +1

Query: 775 PXPXXPPPHXPXPXPPXXXPPPPPXPXPXPXPXXXXPP 888
           P P  P PH   P  P    PP P   P P      PP
Sbjct: 21  PGPQ-PSPHQS-PQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 14/38 (36%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
 Frame = +3

Query: 657 PXP-PXPFPLXPPXPXXPXPP--PPXXXPPPXPPXPPP 761
           P P P   P  P     P P   PP   PP  PP   P
Sbjct: 23  PQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 13/40 (32%), Positives = 13/40 (32%)
 Frame = +1

Query: 817 PPXXXPPPPPXPXPXPXPXXXXPPPXPXXPPPXPPPPXXP 936
           PP    P PP P           PP P  P   P  P  P
Sbjct: 410 PPSAGAPMPPIPN---MSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 11/37 (29%), Positives = 11/37 (29%)
 Frame = +2

Query: 833 PPPPXXPPPPXNXXXQXXXXXPXPPPPXPPPXXPPXP 943
           PP    P PP           P P  P   P  P  P
Sbjct: 410 PPSAGAPMPPIPNMSNMSGMPPLPNMPGSMPTMPTMP 446



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +3

Query: 663 PPXPFPLXPPXPXXPXPPPPXXXPPPXPPXPPPP 764
           P    P   P P    P  P    PP P   PPP
Sbjct: 16  PSSGAPGPQPSPHQS-PQAPQRGSPPNPSQGPPP 48



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = +2

Query: 494 PPXGXKXPPPPPPPXA 541
           PP   + PPP  PP A
Sbjct: 39  PPNPSQGPPPGGPPGA 54


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 25.4 bits (53), Expect = 0.77
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 894 PPXPPPXPPPP 926
           PP P P PPPP
Sbjct: 338 PPKPAPPPPPP 348



 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/15 (53%), Positives = 8/15 (53%)
 Frame = +3

Query: 819 PXPXPPPPPXPXPXP 863
           P P PPPPP     P
Sbjct: 339 PKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 687 PPXPXXPXPPPPXXXP 734
           PP P  P PPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 810 PXXPXPXPPPPPXPXP 857
           P  P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 817 PPXXXPPPPPXPXPXP 864
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +1

Query: 895 PXXPPPXPPPPXXPXP 942
           P  P P PPPP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.0 bits (47), Expect = 4.1
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 717 PPXXXPPPXPPXPPPP 764
           PP   PPP PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +1

Query: 886 PPXPXXPPPXP 918
           PP P  PPP P
Sbjct: 338 PPKPAPPPPPP 348



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 509 KXPPPPPPP 535
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.0
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +2

Query: 515  PPPPPPPXAXXXXY 556
            PPPPPPP +    Y
Sbjct: 1355 PPPPPPPPSSGQAY 1368



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 903  PPPXPPPP 926
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 23.4 bits (48), Expect = 3.1
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 904  PPPXPPPP 927
            PPP PPPP
Sbjct: 1355 PPPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 744  PPXPPPP 764
            PP PPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 825  PXPPPPP 845
            P PPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 825  PXPPPPP 845
            P PPPPP
Sbjct: 1356 PPPPPPP 1362



 Score = 20.6 bits (41), Expect(2) = 2.9
 Identities = 6/7 (85%), Positives = 6/7 (85%)
 Frame = +3

Query: 831  PPPPPXP 851
            PPPPP P
Sbjct: 1356 PPPPPPP 1362


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.8 bits (49), Expect = 2.4
 Identities = 8/13 (61%), Positives = 8/13 (61%)
 Frame = +2

Query: 494  PPXGXKXPPPPPP 532
            P  G   PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864



 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/13 (53%), Positives = 7/13 (53%)
 Frame = +2

Query: 497  PXGXKXPPPPPPP 535
            P      PPPPPP
Sbjct: 1852 PVSGSPEPPPPPP 1864


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 23.4 bits (48), Expect = 3.1
 Identities = 13/48 (27%), Positives = 14/48 (29%)
 Frame = +1

Query: 793 PPHXPXPXPPXXXPPPPPXPXPXPXPXXXXPPPXPXXPPPXPPPPXXP 936
           P + P P PP       P   P        P P P  P     P   P
Sbjct: 103 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHPRLRREPEAEP 150



 Score = 22.6 bits (46), Expect = 5.4
 Identities = 11/38 (28%), Positives = 12/38 (31%)
 Frame = +1

Query: 793 PPHXPXPXPPXXXPPPPPXPXPXPXPXXXXPPPXPXXP 906
           P + P P PP       P   P        P P P  P
Sbjct: 129 PVYIPQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166



 Score = 21.8 bits (44), Expect = 9.5
 Identities = 10/34 (29%), Positives = 10/34 (29%)
 Frame = +2

Query: 818 PPPXXPPPPXXPPPPXNXXXQXXXXXPXPPPPXP 919
           P P  P P     P            P P PP P
Sbjct: 133 PQPRPPHPRLRREPEAEPGNNRPVYIPQPRPPHP 166


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.2 bits (45), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +3

Query: 243 PPPPPXRG 266
           PPPPP RG
Sbjct: 376 PPPPPIRG 383


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 288,184
Number of Sequences: 438
Number of extensions: 23701
Number of successful extensions: 126
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 81
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31565079
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)