Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P04
         (1048 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   2.2  
AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate neu...    22   6.8  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   9.0  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 792 PPPPPPP 812
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 910 APPPPPXP 933
           APPPPP P
Sbjct: 730 APPPPPPP 737


>AY695257-1|AAW21974.1|  224|Tribolium castaneum intermediate
           neuroblasts defectiveprotein protein.
          Length = 224

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 894 PXXPPRPXPPP 926
           P  PP P PPP
Sbjct: 95  PTTPPTPSPPP 105


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 9.0
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = +2

Query: 788 TPPPPPPXXXQPXPXPPP 841
           +PPPP     QP P   P
Sbjct: 329 SPPPPYQISAQPTPSQSP 346


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,240
Number of Sequences: 336
Number of extensions: 3244
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 29898130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)