Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_P04
         (1048 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    24   0.37 
X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor pro...    26   0.49 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    25   1.1  
X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor pro...    25   1.5  
X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor pro...    25   1.5  
AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor p...    25   1.5  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       25   1.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.9  

>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 903 PPRPXPPPXP 932
           PP+P PPP P
Sbjct: 338 PPKPAPPPPP 347



 Score = 23.4 bits (48), Expect = 3.4
 Identities = 8/10 (80%), Positives = 8/10 (80%)
 Frame = +1

Query: 907 PAPPPPPXPS 936
           PAPPPPP  S
Sbjct: 341 PAPPPPPPSS 350



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 9/19 (47%), Positives = 9/19 (47%)
 Frame = +1

Query: 907 PAPPPPPXPSXXXRPXXAK 963
           P P PPP P     P  AK
Sbjct: 339 PKPAPPPPPPSSSGPDSAK 357



 Score = 22.6 bits (46), Expect(2) = 0.37
 Identities = 7/13 (53%), Positives = 8/13 (61%)
 Frame = +3

Query: 792 PPPPPPPXXNQXP 830
           P PPPPP  +  P
Sbjct: 341 PAPPPPPPSSSGP 353



 Score = 22.2 bits (45), Expect(2) = 0.37
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +3

Query: 786 KXPPPPPPP 812
           K  PPPPPP
Sbjct: 340 KPAPPPPPP 348


>X72577-1|CAA51169.1|  283|Apis mellifera Apidaecin precursor
           protein.
          Length = 283

 Score = 26.2 bits (55), Expect = 0.49
 Identities = 12/34 (35%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  K     P     P PP
Sbjct: 246 PQPRPPHPRLRREAKPEAKPGNNRPVYIPQPRPP 279



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 50  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 83



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 190 PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 223



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 218 PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 251



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +3

Query: 810 PXXNQXPXPPXPXAXGGXAPXXKXXXXXPXXPPRPXPP 923
           P     P PP P       P  +     P   P+P PP
Sbjct: 102 PVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 139



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 11/38 (28%), Positives = 13/38 (34%)
 Frame = +3

Query: 810 PXXNQXPXPPXPXAXGGXAPXXKXXXXXPXXPPRPXPP 923
           P     P PP P       P  +     P   P+P PP
Sbjct: 158 PVYISQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 195


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 25.0 bits (52), Expect = 1.1
 Identities = 8/11 (72%), Positives = 8/11 (72%)
 Frame = +3

Query: 792  PPPPPPPXXNQ 824
            PPPPPPP   Q
Sbjct: 1356 PPPPPPPSSGQ 1366



 Score = 23.8 bits (49), Expect = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 792  PPPPPPP 812
            PPPPPPP
Sbjct: 1355 PPPPPPP 1361



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/9 (77%), Positives = 7/9 (77%)
 Frame = +2

Query: 818  QPXPXPPPP 844
            QP P PPPP
Sbjct: 1354 QPPPPPPPP 1362



 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = +1

Query: 913  PPPPPXPS 936
            PPPPP PS
Sbjct: 1356 PPPPPPPS 1363


>X72576-1|CAA51168.1|  144|Apis mellifera Apidaecin precursor
           protein.
          Length = 144

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 51  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 84



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 79  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 112



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 107 PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 140


>X72575-1|CAA51167.1|  168|Apis mellifera Apidaecin precursor
           protein.
          Length = 168

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 51  PQPRPPHPRLRREAEPKAEPGNNRPIYIPQPRPP 84


>AF442148-1|AAL35349.1|  199|Apis mellifera apidaecin precursor
           protein.
          Length = 199

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 22  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 55



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 50  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 83



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 78  PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 111



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 106 PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 139



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 134 PQPRPPHPRLRREAKPEAEPGNNRPVYIPQPRPP 167



 Score = 24.6 bits (51), Expect = 1.5
 Identities = 11/34 (32%), Positives = 12/34 (35%)
 Frame = +2

Query: 821 PXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPP 922
           P P PP P   R   P  +     P     P PP
Sbjct: 162 PQPRPPHPRLRREAEPEAEPGNNRPVYIPQPRPP 195


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 24.6 bits (51), Expect = 1.5
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = +2

Query: 818 QPXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPPPXXP 934
           QP P   P    RG  P     + PP    P  PP   P
Sbjct: 24  QPSPHQSPQAPQRGSPP--NPSQGPPPGGPPGAPPSQNP 60



 Score = 23.0 bits (47), Expect = 4.5
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +2

Query: 806 PXXXQPXPXPPPPXXXRGXXPPXKKXKXPPXRAXPPXPPPXXP 934
           P    P P P P    +    P +     P +  PP  PP  P
Sbjct: 16  PSSGAPGPQPSP---HQSPQAPQRGSPPNPSQGPPPGGPPGAP 55


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 7.9
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 792  PPPPPPPXXN 821
            P PPPPP  N
Sbjct: 1857 PEPPPPPPRN 1866


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,240
Number of Sequences: 438
Number of extensions: 9689
Number of successful extensions: 69
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 34824789
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)