Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_P03
(864 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|... 295 5e-81
SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein ... 295 5e-81
SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein L... 295 5e-81
SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit L2|Sc... 45 1e-05
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 29 1.1
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa... 27 4.5
SPAC23D3.10c |eng2||endo-1,3-beta-glucanase Eng2|Schizosaccharom... 26 7.9
>SPAC1F7.13c |rpl801|rpl8-1, rpl18, rpk5a, rpl2-1, SPAC21E11.02c|60S
ribosomal protein L8|Schizosaccharomyces pombe|chr
1|||Manual
Length = 253
Score = 295 bits (724), Expect = 5e-81
Identities = 137/223 (61%), Positives = 168/223 (75%)
Frame = +2
Query: 107 GRVXRAXRXGAGSVFVSXXQXRXGAPKLRSLXYAXRHGXIKGVVKXXIHXPGXGAPLAVV 286
GRV RA R +G +F + + R GA +LR+L +A RHG I+GVV+ IH PG GAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 287 HFRDPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCXLEEKMG 466
FR+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ +EEK G
Sbjct: 61 AFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAG 120
Query: 467 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSXRGMVGIVAGGGRIDKPILK 646
DRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LK
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLK 180
Query: 647 AGRAYHKYKVXRNCWPYVRGVAMXPGXASSRWWYHQHIGXAST 775
AGRA+HKY+V RNCWP RGVAM P HQH+G ++T
Sbjct: 181 AGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
>SPBC2F12.07c |rpl802|rpl8-2, rpk37, rpk5b|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 295 bits (724), Expect = 5e-81
Identities = 137/223 (61%), Positives = 168/223 (75%)
Frame = +2
Query: 107 GRVXRAXRXGAGSVFVSXXQXRXGAPKLRSLXYAXRHGXIKGVVKXXIHXPGXGAPLAVV 286
GRV RA R +G +F + + R GA +LR+L +A RHG I+GVV+ IH PG GAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 287 HFRDPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCXLEEKMG 466
FR+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ +EEK G
Sbjct: 61 AFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAG 120
Query: 467 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSXRGMVGIVAGGGRIDKPILK 646
DRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LK
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLK 180
Query: 647 AGRAYHKYKVXRNCWPYVRGVAMXPGXASSRWWYHQHIGXAST 775
AGRA+HKY+V RNCWP RGVAM P HQH+G ++T
Sbjct: 181 AGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
>SPBC839.04 |rpl803|rpl8-3, rpk5-b, rpkD4|60S ribosomal protein
L8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 253
Score = 295 bits (724), Expect = 5e-81
Identities = 137/223 (61%), Positives = 168/223 (75%)
Frame = +2
Query: 107 GRVXRAXRXGAGSVFVSXXQXRXGAPKLRSLXYAXRHGXIKGVVKXXIHXPGXGAPLAVV 286
GRV RA R +G +F + + R GA +LR+L +A RHG I+GVV+ IH PG GAPLA V
Sbjct: 2 GRVIRAQRK-SGGIFQAHTRLRKGAAQLRTLDFAERHGYIRGVVQKIIHDPGRGAPLAKV 60
Query: 287 HFRDPYKFKXRKELFIAPEGLYTGQFVYCGKKATLEVGNVMPVGAMPEGTIVCXLEEKMG 466
FR+PY ++ E F+A EG+YTGQFVYCGK A L VGNV+PVG MPEGTI+ +EEK G
Sbjct: 61 AFRNPYHYRTDVETFVATEGMYTGQFVYCGKNAALTVGNVLPVGEMPEGTIISNVEEKAG 120
Query: 467 DRGRLARASGNFATVIGHNPDAKRTRVKLPSGAKKVLPSSXRGMVGIVAGGGRIDKPILK 646
DRG L R+SGN+ ++GH+ D +TRVKLPSGAKKV+PSS RG+VGIVAGGGRIDKP+LK
Sbjct: 121 DRGALGRSSGNYVIIVGHDVDTGKTRVKLPSGAKKVVPSSARGVVGIVAGGGRIDKPLLK 180
Query: 647 AGRAYHKYKVXRNCWPYVRGVAMXPGXASSRWWYHQHIGXAST 775
AGRA+HKY+V RNCWP RGVAM P HQH+G ++T
Sbjct: 181 AGRAFHKYRVKRNCWPRTRGVAMNPVDHPHGGGNHQHVGHSTT 223
>SPCC16C4.15 |rml2||mitochondrial ribosomal protein subunit
L2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 318
Score = 45.2 bits (102), Expect = 1e-05
Identities = 32/111 (28%), Positives = 57/111 (51%)
Frame = +2
Query: 389 LEVGNVMPVGAMPEGTIVCXLEEKMGDRGRLARASGNFATVIGHNPDAKRTRVKLPSGAK 568
L+ GN P+ +P GT++ + + +L R++G+ A +I D K V+L SG +
Sbjct: 162 LKPGNCFPLRLIPIGTVIHAIGVNPNQKAKLCRSAGSSARIIAF--DGKYAIVRLQSGEE 219
Query: 569 KVLPSSXRGMVGIVAGGGRIDKPILKAGRAYHKYKVXRNCWPYVRGVAMXP 721
+ + + +G+V+ + + KAGR+ ++ R P VRG AM P
Sbjct: 220 RKILDTSFATIGVVSNIYWQHRQLGKAGRS--RWLGIR---PTVRGTAMNP 265
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 28.7 bits (61), Expect = 1.1
Identities = 16/56 (28%), Positives = 23/56 (41%)
Frame = -1
Query: 615 PATIPTMPLXLDGRTFLAPDGSFTLVRLASGLCPITVAKFPEARARRPLSPIFSSR 448
PAT+P F P F +L SGL V+ +P+ + +P SR
Sbjct: 246 PATVPITQAASTANAFQQPSNQFQTQKLPSGLDTRPVSSYPDELTQLESNPDSFSR 301
>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 639
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = -2
Query: 143 NRHPXAEHGXHDPXXRPGKRTDG 75
+RH ++HG HD RP R G
Sbjct: 33 SRHRESKHGRHDRSERPSSREAG 55
>SPAC23D3.10c |eng2||endo-1,3-beta-glucanase
Eng2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 706
Score = 25.8 bits (54), Expect = 7.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = -1
Query: 474 PLSPIFSSRXHTMVPSGIAPTGITFPTSRVAFF 376
P++P+F SR H P G+ T FP F+
Sbjct: 11 PINPVFPSRAHPSPPLGL--TSNLFPIQTNKFY 41
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,006,273
Number of Sequences: 5004
Number of extensions: 56408
Number of successful extensions: 125
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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