Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O24
         (1077 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.7  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   4.7  

>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 119 RKKLSDVMRFLFACEGMAVPVSLTRYAPSSQAHK 220
           RK L   +  +  C G++    LT Y PS    K
Sbjct: 242 RKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEK 275


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.0 bits (47), Expect = 4.7
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 119 RKKLSDVMRFLFACEGMAVPVSLTRYAPSSQAHK 220
           RK L   +  +  C G++    LT Y PS    K
Sbjct: 242 RKTLFYTVNIIIPCMGISFLTVLTFYLPSDSGEK 275


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 203,326
Number of Sequences: 438
Number of extensions: 6568
Number of successful extensions: 10
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 59
effective length of database: 120,501
effective search space used: 36029799
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)