Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O21
         (855 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2 |...    30   0.48 
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    27   4.5  
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce...    26   7.8  
SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces pom...    26   7.8  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   7.8  

>SPCC895.06 |||RNA polymerase II elongator complex subunit Elp2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 760

 Score = 29.9 bits (64), Expect = 0.48
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -2

Query: 737 CLRCWGKSGNWNSWR 693
           C+ CWG++G W  W+
Sbjct: 340 CVVCWGRTGGWRLWK 354


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +2

Query: 767 LNAYYYYFXSHLPXWWNSGKYGAFK 841
           LN Y  YF +H P      K+G+FK
Sbjct: 119 LNKYASYFQAHEPTLQKLAKFGSFK 143


>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1210

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 27/122 (22%), Positives = 52/122 (42%), Gaps = 6/122 (4%)
 Frame = -3

Query: 421  GIIEQLEQRDGFFPHFFVKD---REFQILGKESDLVHHHEIFVGFHVCVAVLA-GLDVEV 254
            G  + +E        F++K+   +E Q   K  D +HH EI++  H+    +A  L +  
Sbjct: 1029 GFKKSIEDSYTMKKRFWIKEYFLKEVQASWKTDDNLHHGEIYLRNHILSDEMANNLSILP 1088

Query: 253  LGDFVVLSFIADLVNVVEKRQ--NLLLLFDERSVNRCRFEFRYGATESEGNKPR*NQDXL 80
            +     +S+ ++ V  V  R+   L+L F   +    R++  +    ++ N    N   L
Sbjct: 1089 IRIQAWVSYDSEKVTTVCPREPFKLVLEFFGHADTNMRYKISWTQLNTQANTSSFNGLIL 1148

Query: 79   HG 74
             G
Sbjct: 1149 DG 1150


>SPAC14C4.11 |||polyphosphate synthetase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = +2

Query: 785 YFXSHLPXWWNSGKYGAFKDRRG 853
           Y   HLP  + SGK G  KD+ G
Sbjct: 219 YIMRHLPVLYYSGKQGFDKDQNG 241


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 17/62 (27%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = -3

Query: 343 GKESDLVHHHEIFVGFHVCVAVLAGLDVEVLGDFVVLSFIADLVNVVE-KRQNLLLLFDE 167
           G  S  +HHH++ +  H  +  L G   EV G    L++ +D + +      N++ ++D 
Sbjct: 279 GSRSGAIHHHDVRIANHQ-IGTLQGHSSEVCG----LAWRSDGLQLASGGNDNVVQIWDA 333

Query: 166 RS 161
           RS
Sbjct: 334 RS 335


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,095,671
Number of Sequences: 5004
Number of extensions: 60662
Number of successful extensions: 184
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)