Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O20
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0750 - 6754126-6755248,6755331-6755791                           31   0.89 
03_06_0074 - 31476094-31476215,31477803-31478238,31478438-314784...    30   2.7  
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    29   3.6  
05_04_0139 + 18355597-18355696,18356665-18356778,18357118-183572...    29   4.7  
01_06_1341 - 36434098-36436080                                         29   4.7  
04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004     28   8.3  
01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112     28   8.3  

>12_01_0750 - 6754126-6755248,6755331-6755791
          Length = 527

 Score = 31.5 bits (68), Expect = 0.89
 Identities = 20/52 (38%), Positives = 24/52 (46%), Gaps = 2/52 (3%)
 Frame = -2

Query: 507 PARSLEWG*RSGSLVAEGNRLRFLVAVR-SW-YRQGSGGDDQVCTPGPLKAP 358
           P   L W     S  A G R  F+VA R +W +R+G  GD   C  G L  P
Sbjct: 212 PREFLRWLTSQPSWAALGGRDHFMVAARTTWMFRRGGAGDSLGCGNGFLSRP 263


>03_06_0074 -
           31476094-31476215,31477803-31478238,31478438-31478485,
           31478569-31479018,31479567-31479681,31480052-31480905
          Length = 674

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/52 (32%), Positives = 22/52 (42%)
 Frame = +2

Query: 338 PPARSRTGAFNGPGVHT*SSPPDPCRYQLRTATRKRSLLPSATREPDLQPHS 493
           PP   R      PG+ T      P      TAT KR+  P++T  P   PH+
Sbjct: 43  PPLPPRRSPQKRPGLPTIPENGPPAGMATATATPKRTRTPTSTCAPPPPPHA 94


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 18/69 (26%), Positives = 27/69 (39%)
 Frame = +3

Query: 330 VMYRQPEAAQAPSTGQVYIPDRRRQTLADTSYVPQQENEVYYPQQPENPIFSPTQAXELA 509
           ++ R  E A  P T   Y P          +Y PQ + E Y P QP+   + P    +  
Sbjct: 210 LLARDVEHAAYPPTSTTYPPQPYPPQPQGQTYPPQPQGETYQP-QPQRETYPPQPQVQPY 268

Query: 510 XPTEKVELY 536
            P  + + Y
Sbjct: 269 PPKPQGQPY 277


>05_04_0139 +
           18355597-18355696,18356665-18356778,18357118-18357263,
           18357365-18357910,18358397-18358600
          Length = 369

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 35/103 (33%), Positives = 40/103 (38%)
 Frame = -2

Query: 549 PEWLSTVRPFQWXQPARSLEWG*RSGSLVAEGNRLRFLVAVRSWYRQGSGGDDQVCTPGP 370
           P+ L  VR       A SLE    S SL  +  R RFLV + S YR G GG D     G 
Sbjct: 165 PDHLVAVRKAYRAAYASSLEEDVASCSLFGDPLR-RFLVRLVSSYRYGGGGVD-----GE 218

Query: 369 LKAPVRLRAGGT*RGHATAHSSGVVVRIIVTAHDQASSVTXAR 241
           L             G   A     VVRI+ T      +VT  R
Sbjct: 219 LAIAEAAELHDAVVGRGQALHGDDVVRIVGTRSKAQLAVTLER 261


>01_06_1341 - 36434098-36436080
          Length = 660

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 15/52 (28%), Positives = 27/52 (51%)
 Frame = +1

Query: 340 ASPKPHRRLQRARCTYLIVAARPLPIPATYRNKKTKSITLSNQRTRSSAPLK 495
           A P+   R+ R+RC   + +  P P PA   N   +++  S +  R++A L+
Sbjct: 21  AGPRARPRVSRSRCVASLASQPPTPPPAN-ANHLVQTLCASGRLARAAALLQ 71


>04_04_0872 + 28903099-28903644,28903739-28904544,28904620-28905004
          Length = 578

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 13/23 (56%), Positives = 17/23 (73%), Gaps = 2/23 (8%)
 Frame = +2

Query: 428 TATRKRSLLPSATREPDLQ--PH 490
           T +++ SLLPS  REPDL+  PH
Sbjct: 123 TLSKQNSLLPSRIREPDLELPPH 145


>01_03_0059 + 12109301-12109330,12109465-12109587,12109663-12110112
          Length = 200

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = -2

Query: 423 SWYRQGSGGDDQVCTPGPLKAPVRLRAGG 337
           SWY  GSG    V  P    APV + AGG
Sbjct: 132 SWYASGSGVGRMVQVPAIDAAPVCIAAGG 160


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,180,862
Number of Sequences: 37544
Number of extensions: 392309
Number of successful extensions: 1087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1055
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)