Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O18
         (1317 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702...    31   2.7  
03_01_0515 - 3864796-3865425                                           29   8.2  

>01_06_1827 + 40169001-40169263,40169358-40169472,40170090-40170201,
            40170556-40170623,40170798-40170852,40170948-40171027,
            40171811-40171924,40172178-40172296,40173064-40173181,
            40173264-40173394,40173535-40173688,40173922-40174017
          Length = 474

 Score = 30.7 bits (66), Expect = 2.7
 Identities = 14/41 (34%), Positives = 18/41 (43%)
 Frame = +3

Query: 1164 PVARXAXXXSPVASRASGPESQXPPPXXQXXPXPPXAXXXP 1286
            P A      +P A+R + P    PPP  +  P PP A   P
Sbjct: 3    PPAGLLPWPAPSAARLAAPTRTRPPPRTRVRPPPPPAPPPP 43


>03_01_0515 - 3864796-3865425
          Length = 209

 Score = 29.1 bits (62), Expect = 8.2
 Identities = 19/56 (33%), Positives = 21/56 (37%)
 Frame = +1

Query: 622 ARAXXXXPAGXXSPSQLXPAPXXMXXSAPRPRXXPLRVXAXXPPGXTAYRRARPLP 789
           A A    P    SP  L P P  +  S P P   PL      PP  T+     PLP
Sbjct: 35  AEASPPSPPTEASPPPLAPPPS-VTSSPPPPAAGPLMPPPPPPPSVTSSPPPPPLP 89


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,443,602
Number of Sequences: 37544
Number of extensions: 225351
Number of successful extensions: 1520
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 924
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1446
length of database: 14,793,348
effective HSP length: 84
effective length of database: 11,639,652
effective search space used: 4120436808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)