Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O15
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces p...    29   0.67 
SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces...    27   4.7  
SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces pomb...    26   6.2  

>SPAC17G8.06c |||dihydroxy-acid dehydratase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = -3

Query: 433 VMLLGGEIETGNSRCCSILAIDIIQAFFGDGK 338
           +M+ GG I  G+S C +   IDI+ AF   G+
Sbjct: 176 IMVYGGSIRAGHSPCQNNAPIDIVSAFQSYGE 207


>SPBC1709.08 |cft1||cleavage factor one Cft1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1441

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = -1

Query: 378 SQSISYKPSSVTANVFSSCTIKLLTISKSLFLITSPFSMAQYKPHNVT*WTLP 220
           S S +YKPS V A+     +I  +   K L+    P     Y P   +  TLP
Sbjct: 209 SSSYAYKPSFVLASSQLDASISRILDVKFLYGYREPTLAILYSPEQTSTVTLP 261


>SPBC21B10.09 |||acetyl-CoA transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 519

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 23/78 (29%), Positives = 34/78 (43%)
 Frame = -1

Query: 399 TLVAVPFSQSISYKPSSVTANVFSSCTIKLLTISKSLFLITSPFSMAQYKPHNVT*WTLP 220
           +L A P+S  + + P   T    S    K   +   + LI+S   +  Y   NV  W   
Sbjct: 90  SLAAYPYSLKVLWSPIVDTYYCRSFGRRKTWVVP-CMLLISSTLLLFSY---NVDTWISK 145

Query: 219 RSSTSNSTTVFPFLILIV 166
            SS  NS T + FL++ V
Sbjct: 146 GSSYINSFTTWSFLLVFV 163


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,020,854
Number of Sequences: 5004
Number of extensions: 36862
Number of successful extensions: 107
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)