Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O15
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0613 + 18034727-18036175                                         29   5.0  
02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915           29   5.0  
01_06_1315 + 36226262-36226533,36227946-36228060,36228710-362287...    29   6.6  

>04_03_0613 + 18034727-18036175
          Length = 482

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 17/48 (35%), Positives = 25/48 (52%)
 Frame = +2

Query: 278 VIKNKDLDIVNNFIVHEEKTFAVTEEGLYDIDCENGTATRVARLDFAP 421
           V  NK+  +VN+FI   + ++       YD+ CEN    R+ARL   P
Sbjct: 205 VFVNKET-MVNHFITRHDPSYNANCVYKYDLCCENLEDLRLARLRTEP 251


>02_02_0354 + 9283886-9285505,9287158-9287251,9287817-9289915
          Length = 1270

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
 Frame = +2

Query: 140 YKVYXHGKATIRMRNGKTVVEFDVDERGNVHYVTLCGLYCAIENGEVIKNKDLDIVNNFI 319
           + V+    A +  R+G  ++  D++   N+HY       C+   G + K K L  +  F 
Sbjct: 559 HNVFRRSAAALAERHGNYILPDDINRLANLHYFLAKKELCSNIRG-IGKMKYLRRLQEFH 617

Query: 320 VHEEKT-FAVTEEG 358
           V +E+T F + E G
Sbjct: 618 VKKERTGFELRELG 631


>01_06_1315 +
           36226262-36226533,36227946-36228060,36228710-36228752,
           36229953-36230329,36230330-36230481,36230591-36230838,
           36230919-36231047,36231130-36231739,36231842-36232086,
           36232195-36232325
          Length = 773

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 86  LVVXXXQMYLLXANNHMXYKVYXHGKATIRMRNG 187
           LVV      ++  +NHM Y V  H    +++RNG
Sbjct: 296 LVVREGDRLVVKVHNHMNYNVSFHWHGILQLRNG 329


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,825,210
Number of Sequences: 37544
Number of extensions: 229389
Number of successful extensions: 552
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 552
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)