Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O13
         (1429 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    33   0.073
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    29   1.2  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    27   8.4  

>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 309

 Score = 33.5 bits (73), Expect = 0.073
 Identities = 21/65 (32%), Positives = 24/65 (36%), Gaps = 1/65 (1%)
 Frame = +3

Query: 1185 APAPXTSXXAXLPP-NXKSSXXXSPRSPLVXPPXXLPXSPXXXPLPPGXRPXXRSXSXPT 1361
            APAP T      PP +        P SP   PP      P    LPP  +P     S P+
Sbjct: 127  APAPPTPQSELRPPTSAPPRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPS 186

Query: 1362 XPXPP 1376
             P  P
Sbjct: 187  APSLP 191



 Score = 26.6 bits (56), Expect = 8.4
 Identities = 21/75 (28%), Positives = 25/75 (33%)
 Frame = +3

Query: 1170 RLXSXAPAPXTSXXAXLPPNXKSSXXXSPRSPLVXPPXXLPXSPXXXPLPPGXRPXXRSX 1349
            R  + AP P  S     P +       +P  P   PP   P +P   P      P     
Sbjct: 138  RPPTSAP-PRPSIPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPPSAPSLPSAVPP 196

Query: 1350 SXPTXPXPPPXXQXP 1394
              P  P PPP  Q P
Sbjct: 197  MPPKVP-PPPLSQAP 210


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 29.5 bits (63), Expect = 1.2
 Identities = 17/63 (26%), Positives = 21/63 (33%), Gaps = 1/63 (1%)
 Frame = +3

Query: 1188 PAPXTSXXAXLPPNXKSSXXXSPRSPLVXPPXXLPXSP-XXXPLPPGXRPXXRSXSXPTX 1364
            P P T+    +P +       S  +P   PP   P S     P P G  P       P  
Sbjct: 1035 PVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPV 1094

Query: 1365 PXP 1373
            P P
Sbjct: 1095 PKP 1097



 Score = 28.7 bits (61), Expect = 2.1
 Identities = 19/70 (27%), Positives = 25/70 (35%), Gaps = 1/70 (1%)
 Frame = +3

Query: 1188 PAPXTSXXAXLP-PNXKSSXXXSPRSPLVXPPXXLPXSPXXXPLPPGXRPXXRSXSXPTX 1364
            P P  S    +P P+  +    +P S +  PP   P +      PP   P     S    
Sbjct: 1151 PVPAPSGAPPVPKPSVAAPPVPAPSSGI--PPVPKPAAGVPPVPPPSEAPPVPKPSVGVP 1208

Query: 1365 PXPPPXXQXP 1394
            P PPP    P
Sbjct: 1209 PVPPPSTAPP 1218



 Score = 28.3 bits (60), Expect = 2.8
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 4/60 (6%)
 Frame = +3

Query: 1212 AXLPPNXKSSXXXSPRSPLVX---PPXXLPXSPXXXPLPPGXRPXXRSXS-XPTXPXPPP 1379
            A +PP  K S   +P  PL     PP  +P +    P+P    P  +S S  P+ P P P
Sbjct: 1009 ARVPPVPKLSSK-APPVPLPSADAPPIPVPSTAPPVPIPTSTPPVPKSSSGAPSAPPPVP 1067



 Score = 27.5 bits (58), Expect = 4.8
 Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 1/73 (1%)
 Frame = +3

Query: 1179 SXAPAPXTSXXAXLPPNXKSSXXXSP-RSPLVXPPXXLPXSPXXXPLPPGXRPXXRSXSX 1355
            S A  P  +  + +PP  K +    P   P   PP   P        PP   P   + S 
Sbjct: 1165 SVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSA 1224

Query: 1356 PTXPXPPPXXQXP 1394
               P P P  + P
Sbjct: 1225 GLPPVPVPTAKAP 1237


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.6 bits (56), Expect = 8.4
 Identities = 16/53 (30%), Positives = 20/53 (37%)
 Frame = +3

Query: 1221 PPNXKSSXXXSPRSPLVXPPXXLPXSPXXXPLPPGXRPXXRSXSXPTXPXPPP 1379
            PP        +P    V PP  +   P   P PPG      + + P  P PPP
Sbjct: 735  PPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGV-----AGAGPPPPPPPP 782


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,666,012
Number of Sequences: 5004
Number of extensions: 12060
Number of successful extensions: 57
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 49
length of database: 2,362,478
effective HSP length: 75
effective length of database: 1,987,178
effective search space used: 794871200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)