Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O09
         (846 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    62   7e-11
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   4.4  
SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor Thi1|Sc...    26   5.8  

>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 62.5 bits (145), Expect = 7e-11
 Identities = 40/112 (35%), Positives = 53/112 (47%), Gaps = 7/112 (6%)
 Frame = +3

Query: 387 VVQFTVKHEQDXDCGGGYLKVFDCKLEXXDMHGETPYEIMFGPDICGPGTXKVHVIFXY- 563
           VVQ+ V  E+  +CGG YLK+   +    +M     Y IMFGPD CG    +VH IF + 
Sbjct: 119 VVQYEVNPEEGLNCGGAYLKLL-AEPTHGEMSNSIDYRIMFGPDKCGV-NDRVHFIFKHK 176

Query: 564 ------XGKXHLIKKDIRCKDDVXTHLYTLIVKPXNXYEXLIDHXXXXSGDL 701
                   + HL  +         T+LYTLIVKP   +E  I+      G L
Sbjct: 177 NPLTGEYSEKHLDSRPASLLKPGITNLYTLIVKPDQTFEVRINGDVVRQGSL 228


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 17/42 (40%), Positives = 21/42 (50%)
 Frame = +2

Query: 269 AGKFFSDPEDDKGLKTSEDARFYALSRKFKPFSNEGKPLGSP 394
           A  F S  E  KGL +SE    Y+L     P SN+ + L SP
Sbjct: 263 ADSFLSHSESIKGLSSSEQGTVYSLKASHDP-SNQTQ-LSSP 302


>SPAC1486.10 |thi1|ntf1, SPAC6G10.01|transcription factor
           Thi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 333 NLASSEVFKPLSSSGSLKNFPAVNLNFPNSFP 238
           N   +E F+P   + SL N P +N ++ ++ P
Sbjct: 685 NSTPNEAFQPFDQTSSLYNVPGLNKSYVSNQP 716


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,518,264
Number of Sequences: 5004
Number of extensions: 43994
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 94
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)