Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O08
         (885 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual        31   0.29 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   3.6  
SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit R...    26   6.2  

>SPBC646.04 |pla1||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 566

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 16/31 (51%), Positives = 19/31 (61%)
 Frame = +1

Query: 412 VARYCRKXLVEIAVNISIRAKEFSLLHQWTW 504
           VAR C+  L   AV+  I AK F +LHQW W
Sbjct: 239 VARICQ--LYPNAVSSVIVAKFFRILHQWNW 267


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
            Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
 Frame = +2

Query: 539  MVFLEDYKIGRQLQXSRFLGRVFITCSAQINDFLVMTQLN-YVVTFV---AVYEI 691
            M+  E Y +G QLQ  RFL   F      +N+  +M  +  ++V  +   A+Y +
Sbjct: 1330 MLSREYYYLGTQLQLDRFLSFYFAHPGFHLNNMFIMLSVQLFMVVLINLGAIYHV 1384


>SPCC4E9.01c |rec11|SPCC550.16c|meiotic cohesin complex subunit
           Rec11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 923

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +2

Query: 542 VFLEDYKIGRQLQXSRFLGRVFITCSAQINDFLVMTQLNYVVTF 673
           +FL+  K+ +Q   + FL +VFIT +  +  FL     N+ + F
Sbjct: 798 IFLKAAKVAKQKNGNSFLSKVFITIT-MLTLFLGSKANNWDINF 840


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,067
Number of Sequences: 5004
Number of extensions: 28755
Number of successful extensions: 39
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 39
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)