Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O06
         (1049 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.15 
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    29   1.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   1.1  
SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr...    27   5.8  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   5.8  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.9 bits (69), Expect = 0.15
 Identities = 20/53 (37%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = +2

Query: 503  PAXPXSLPXXRXCLVFGXXX--PPGPPXXXXLPPVPXAPPIXXSPASPXXXPP 655
            PA P S P  R           P  PP    +PP P APP+   PA P   PP
Sbjct: 1683 PAHPVSTPPVRPQSAAPPQMSAPTPPPPPMSVPPPPSAPPM---PAGPPSAPP 1732



 Score = 28.3 bits (60), Expect = 1.9
 Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 1/47 (2%)
 Frame = +3

Query: 717  PEIIAXXPAXPPXPLPXPXTXPQLP-DPXCPTXXPXLXXXTPXXPLP 854
            P++ A  P  PP  +P P + P +P  P      P      P  P P
Sbjct: 1700 PQMSAPTPPPPPMSVPPPPSAPPMPAGPPSAPPPPLPASSAPSVPNP 1746


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +2

Query: 572 PPXXXXLPPVPXAPPIXXSPASPXXXPP 655
           PP     PP+P + P    PA+P   PP
Sbjct: 158 PPIPSKAPPIPSSLPPPAQPAAPVKSPP 185


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 15/46 (32%), Positives = 19/46 (41%)
 Frame = +3

Query: 717 PEIIAXXPAXPPXPLPXPXTXPQLPDPXCPTXXPXLXXXTPXXPLP 854
           P +I   PA  P P+P P   P +  P  P   P +    P  P P
Sbjct: 737 PAVIVPTPA--PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPP 780


>SPBC2D10.10c |fib1|fib|fibrillarin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 305

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 18/51 (35%), Positives = 18/51 (35%)
 Frame = -3

Query: 615 GGAXGTGGSXXXXGGPGGXXXPXTRHXRXXGRDXGXAGRGXXXGXRXXSXG 463
           G   G GG     GG GG      R     G   G  GRG   G R  S G
Sbjct: 13  GSRGGRGGFNGGRGGFGGGRG-GARGGGRGGARGGRGGRGGARGGRGGSSG 62


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 5.8
 Identities = 14/45 (31%), Positives = 16/45 (35%)
 Frame = +2

Query: 500 LPAXPXSLPXXRXCLVFGXXXPPGPPXXXXLPPVPXAPPIXXSPA 634
           LP    + P            P G P    LPP   APP   +PA
Sbjct: 439 LPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPA 483


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,950,195
Number of Sequences: 5004
Number of extensions: 25434
Number of successful extensions: 107
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 551223336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)