Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_O05
(1007 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 28 0.23
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S... 29 0.78
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 2.0
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 2.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 27 5.5
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2... 27 5.5
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces... 27 5.5
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1... 27 5.5
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 26 7.3
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe... 26 9.7
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 27.9 bits (59), Expect(2) = 0.23
Identities = 9/12 (75%), Positives = 9/12 (75%)
Frame = -1
Query: 866 GXXXPPPPPPPP 831
G PPPPPPPP
Sbjct: 772 GAGPPPPPPPPP 783
Score = 27.1 bits (57), Expect = 4.2
Identities = 9/15 (60%), Positives = 9/15 (60%)
Frame = -1
Query: 878 GXGGGXXXPPPPPPP 834
G G PPPPPPP
Sbjct: 769 GVAGAGPPPPPPPPP 783
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 761 PPPPPPPP 768
Score = 21.8 bits (44), Expect(2) = 0.23
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 869 GGXXXPPPPP 840
GG PPPPP
Sbjct: 759 GGPPPPPPPP 768
>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
Cap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 551
Score = 29.5 bits (63), Expect = 0.78
Identities = 10/17 (58%), Positives = 10/17 (58%)
Frame = -1
Query: 881 GGXGGGXXXPPPPPPPP 831
G G PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 9.7
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = -1
Query: 878 GXGGGXXXPPPPPPPP 831
G G PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343
Score = 25.4 bits (53), Expect(2) = 2.0
Identities = 9/20 (45%), Positives = 9/20 (45%)
Frame = -1
Query: 893 KKXXGGXGGGXXXPPPPPPP 834
K G PPPPPPP
Sbjct: 324 KPPIGNGSSNSSLPPPPPPP 343
Score = 21.0 bits (42), Expect(2) = 2.0
Identities = 6/6 (100%), Positives = 6/6 (100%)
Frame = -1
Query: 848 PPPPPP 831
PPPPPP
Sbjct: 361 PPPPPP 366
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 9 PPPPPPPP 16
Score = 23.8 bits (49), Expect(2) = 2.2
Identities = 7/7 (100%), Positives = 7/7 (100%)
Frame = -1
Query: 854 PPPPPPP 834
PPPPPPP
Sbjct: 24 PPPPPPP 30
Score = 22.2 bits (45), Expect(2) = 2.2
Identities = 7/10 (70%), Positives = 7/10 (70%)
Frame = -1
Query: 866 GXXXPPPPPP 837
G PPPPPP
Sbjct: 7 GNPPPPPPPP 16
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 189 PPPPPPPP 196
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 190 PPPPPPPP 197
>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1217
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102
Score = 23.0 bits (47), Expect(2) = 6.6
Identities = 8/14 (57%), Positives = 8/14 (57%)
Frame = -2
Query: 340 PPPPPPXXGXXPKK 299
PPPPPP KK
Sbjct: 1095 PPPPPPPPAEVEKK 1108
Score = 21.4 bits (43), Expect(2) = 6.6
Identities = 7/12 (58%), Positives = 7/12 (58%)
Frame = -2
Query: 358 KXGXXXPPPPPP 323
K PPPPPP
Sbjct: 1090 KPSAVPPPPPPP 1101
>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 370 PPPPPPPP 377
>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1841
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 945 PPPPPPPP 952
Score = 26.6 bits (56), Expect = 5.5
Identities = 8/8 (100%), Positives = 8/8 (100%)
Frame = -1
Query: 854 PPPPPPPP 831
PPPPPPPP
Sbjct: 946 PPPPPPPP 953
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 26.2 bits (55), Expect = 7.3
Identities = 12/46 (26%), Positives = 18/46 (39%)
Frame = +3
Query: 153 PXXPPAPWXGXXXPPXKXTXVPPXFXKKKXPPPXXGXFFLKKXPPP 290
P P P G P + P +++ PPP + + PPP
Sbjct: 109 PKEPALPSRGTPSLPSRPGSRPSVLNQEQVPPPPVRPNVMSQMPPP 154
>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 273
Score = 25.8 bits (54), Expect = 9.7
Identities = 10/16 (62%), Positives = 10/16 (62%)
Frame = +1
Query: 832 GGGGGGGGXXXPPPXP 879
G GG GGG PPP P
Sbjct: 189 GFGGFGGGSGGPPPGP 204
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,710,117
Number of Sequences: 5004
Number of extensions: 21579
Number of successful extensions: 222
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 132
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 523262732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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