Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_O02
         (854 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    28   1.9  
SPCC794.08 |||HEAT repeat protein, unknown biological role|Schiz...    28   1.9  
SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase ...    27   3.4  
SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7 domain|Schizosaccharo...    27   3.4  
SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    27   4.5  
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    26   5.9  
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      26   5.9  
SPAC637.08 |||iron-sulfur cluster assembly ATPase Nbp35|Schizosa...    26   5.9  
SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr ...    26   7.8  

>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 16/47 (34%), Positives = 28/47 (59%)
 Frame = +2

Query: 563  EVFSYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFE 703
            + + ++H IN  F+L  LLS SL +   SQ  KLL  +++  +++ E
Sbjct: 878  KTYGHLHYIN--FVLEKLLSSSLLTYNSSQRDKLLYEVSLLFKDLQE 922


>SPCC794.08 |||HEAT repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 798

 Score = 27.9 bits (59), Expect = 1.9
 Identities = 27/89 (30%), Positives = 42/89 (47%), Gaps = 8/89 (8%)
 Frame = +2

Query: 173 PHFALHCIRA-SFSSXSQ-----CQFVRGPVPA--PLPLSYSSVAXPNRNLTVASHXVKT 328
           PHFA+HC+   S+S   Q        VR    +  PLP S + V+ P  +    +  V  
Sbjct: 189 PHFAIHCVLINSWSESDQEKKSFIDLVRSTAKSYKPLPPSSTGVSLPEHDEAGDNIDVAI 248

Query: 329 XGFDTIKIIEFYINSKTEKLVLAAEVQSL 415
                I+I+ F I ++T+ L +A   +SL
Sbjct: 249 KKL-CIRIL-FNIYTQTDPLFMAESTKSL 275


>SPBC26H8.03 |cho2||phosphatidylethanolamine N-methyltransferase
           Cho2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 905

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -1

Query: 512 LEFHSQLPMRHFLQLALWLSYC 447
           LEF+S L  RHF+ L L   +C
Sbjct: 199 LEFNSWLVFRHFVDLILMCDFC 220


>SPAC4D7.01c |sec71|sec7a, SPAP8A3.15c|Sec7
           domain|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1811

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 25/90 (27%), Positives = 43/90 (47%), Gaps = 6/90 (6%)
 Frame = +2

Query: 350 IIEFYIN-----SKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLT 514
           +IE Y+N       TE +   A V   ++AS  T    +      + R D L +D     
Sbjct: 527 LIELYLNYDCISGNTENIYERAIVTLSRIASQST----SDPPPSFVFRDDQLVIDKPGF- 581

Query: 515 FTAVFPSISDL-QLSNAEVFSYVHEINPKF 601
              V+ +++D+ QL+++ + SYVH  NP +
Sbjct: 582 ---VYHTLNDIPQLNSSTIGSYVHSHNPPY 608


>SPBC14F5.10c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 486

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 12/38 (31%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
 Frame = +2

Query: 164 SPCPH-FALHCIRASFSSXSQCQFVRGPVPAPLPLSYS 274
           SPC H F   C+  + +   QC   R  +P+P+ L ++
Sbjct: 182 SPCGHTFCGPCLMQALTQSPQCPTCRFGLPSPVVLEHA 219


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 952

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 26/114 (22%), Positives = 54/114 (47%), Gaps = 1/114 (0%)
 Frame = +2

Query: 395 AAEVQSLKLASPKTIFKYNRKAKEPIVRSDALEVDYGTLTFTAVF-PSISDLQLSNAEVF 571
           A E + L+++   T F  +RK  + I   + + ++   L    +   ++ ++  +  + F
Sbjct: 76  AREEKDLQVSRRDTCFYCSRKIIKCICNEEHVGIESVQLKLILLLCQNLPNVTTNAKKYF 135

Query: 572 SYVHEINPKFILGPLLSFSLDSETQSQLGKLLNNIAVSLQEVFEAQGTILMTSY 733
           S + +    F L  L  FSLD++T SQL     + A +L E+ +    +L  ++
Sbjct: 136 SSLAD-GHNFTL-TLYKFSLDNQTFSQLLSRFKSFA-TLTELLQVHNVMLQVNF 186


>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 38/164 (23%), Positives = 63/164 (38%), Gaps = 5/164 (3%)
 Frame = +2

Query: 290  NRNLTVASHXVKTXGFDTIKIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEP 469
            N  L  + H V +    + K IE Y     E + L + V+  KL + K + K        
Sbjct: 731  NHVLDSSKHTVSSASTSSRKFIENY--KSLESIGLTSFVKDNKLKASKELQK-------- 780

Query: 470  IVRSDALEVDYGTLTFTAVFPSISDLQLSNAEVFSYVHEINPKFILGPLLSF--SLDSET 643
            ++  +    +     F      I   +   + VF+Y  E  PK IL  +L F   +   T
Sbjct: 781  LIEENVFPKNLILFIFRKCVIGIKSFEKLQSYVFTYYCERYPKLILKRVLRFLEEIGFIT 840

Query: 644  QSQLGKLLNNIAVSLQEVFE---AQGTILMTSYIQYDICDFGLE 766
                 KL +  A+ L+   E    Q T + +++ +   C   LE
Sbjct: 841  SQYPRKLTDTGALFLKHPSEWGVLQHTFISSNFFENVPCYISLE 884


>SPAC637.08 |||iron-sulfur cluster assembly ATPase
           Nbp35|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 317

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 23/103 (22%), Positives = 40/103 (38%), Gaps = 1/103 (0%)
 Frame = +2

Query: 170 CPHFALHCIRASFSSXSQCQFVRGPVPAPLPLSY-SSVAXPNRNLTVASHXVKTXGFDTI 346
           CP+ A+  I     S       RGP    L   +   V   N +  +      T   + +
Sbjct: 129 CPNLAVMSIGFLLPSEDSSVIWRGPKKNGLIKQFIKDVNWENLDYLIVDTPPGTSD-EHL 187

Query: 347 KIIEFYINSKTEKLVLAAEVQSLKLASPKTIFKYNRKAKEPIV 475
            +++F+ NS  +  V+    Q + L   +    + RKA  PI+
Sbjct: 188 SLVQFFKNSGIDGAVVVTTPQEVALQDVRKEIDFCRKASIPIL 230


>SPBC3D6.03c |||tRNA endonuclease |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 678

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 554 SNAEVFSYVHEINPKFILGPLLSFSLDS 637
           +N  + S V  +NP  ++ PLL  SLD+
Sbjct: 44  TNRIMLSVVSSLNPDSLIAPLLCVSLDN 71


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,514,079
Number of Sequences: 5004
Number of extensions: 42351
Number of successful extensions: 86
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 85
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 86
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)