Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_O01
(841 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 141 1e-34
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 139 4e-34
SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomy... 29 0.82
SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces ... 27 4.4
SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces pomb... 27 4.4
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 27 4.4
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 141 bits (342), Expect = 1e-34
Identities = 74/164 (45%), Positives = 101/164 (61%)
Frame = +1
Query: 265 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 444
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G D+T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHSFRKVKLRVEDIQGKSCLTSFNGFDMTSDKLRS 112
Query: 445 MVKKWQTLIEANIDVKTXDGYVLRVFCIGFXNKDSLSQXKTCYAQXTXVRAIRKXMCEII 624
+V+KWQ+ IEAN +KT DGY+ R+F IGF ++ KT YAQ + +RAI + M ++I
Sbjct: 113 LVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTYAQSSQIRAIHQKMFQVI 172
Query: 625 TXXVTXSEXXEVVNXLIPDSIXXXIXXXXHGXYPLXXVCXXXVK 756
E+V LIP+ I I + YPL V VK
Sbjct: 173 QNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKVK 216
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +3
Query: 102 AVGXXXGLSXGGXXGVXXXLVXPFTRKXWYXVKAPSMFSKXQVGTTLVNRTQGNENCFGR 281
AVG LS G G+ +V PF+RK WY +KAP+ F VG TLVNRT G +N
Sbjct: 2 AVGKNKRLSKG-KKGIKKRVVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDS 60
Query: 282 IEGK 293
++G+
Sbjct: 61 LKGR 64
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 139 bits (337), Expect = 4e-34
Identities = 73/164 (44%), Positives = 102/164 (62%)
Frame = +1
Query: 265 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRW 444
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G+ +T+DKLR
Sbjct: 55 KNANDSLKGRILEVSLADLQKDE--EHAFRKVKLRVEDIQGKSCLTSFNGLSITSDKLRS 112
Query: 445 MVKKWQTLIEANIDVKTXDGYVLRVFCIGFXNKDSLSQXKTCYAQXTXVRAIRKXMCEII 624
+V+KWQT IEA+ +KT DGY+ RVF IGF + + KT YAQ + +RAIR+ M ++I
Sbjct: 113 LVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTYAQSSQIRAIRQKMFQVI 172
Query: 625 TXXVTXSEXXEVVNXLIPDSIXXXIXXXXHGXYPLXXVCXXXVK 756
+ E+V LIP+ I I +PL V VK
Sbjct: 173 QNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKVK 216
Score = 58.4 bits (135), Expect = 1e-09
Identities = 29/64 (45%), Positives = 38/64 (59%)
Frame = +3
Query: 102 AVGXXXGLSXGGXXGVXXXLVXPFTRKXWYXVKAPSMFSKXQVGTTLVNRTQGNENCFGR 281
AVG LS G G+ +V PF+RK WY +KAP+ F VG TLVNRT G +N
Sbjct: 2 AVGKNKRLSKG-KKGIKKRVVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDS 60
Query: 282 IEGK 293
++G+
Sbjct: 61 LKGR 64
>SPBP8B7.19 |spt16||FACT complex component Spt16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1019
Score = 29.1 bits (62), Expect = 0.82
Identities = 24/102 (23%), Positives = 43/102 (42%), Gaps = 1/102 (0%)
Frame = +1
Query: 262 TKIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLR 441
TK+A KG +V++ L+ DAE + + F I EY++ N D T K
Sbjct: 91 TKLAET--KGAAADVNI--LKRTKDAEENKKLFEKIIEYIRATNKKVGVFPKDKTQGK-- 144
Query: 442 WMVKKWQTLIE-ANIDVKTXDGYVLRVFCIGFXNKDSLSQXK 564
+ +W ++ E + D + C+ ++ L+ K
Sbjct: 145 -FINEWDSIFEPVKSEFNLVDASLGLAKCLAIKDEQELANIK 185
>SPBC337.13c |gtr1||Gtr1/RagA G protein Gtr1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 308
Score = 26.6 bits (56), Expect = 4.4
Identities = 21/69 (30%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Frame = +1
Query: 295 VFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHGMDLTTDKLRWMV--KKWQTL 468
VF+V + + D R+ + +A Q R V C H MDL + LR +V ++ L
Sbjct: 86 VFDVESREFERDLVTFRNCLE-ATVANSPQAR-VFCLIHKMDLVQEDLRDLVFEERKAIL 143
Query: 469 IEANIDVKT 495
+E + D++T
Sbjct: 144 LETSKDLET 152
>SPBC21C3.15c |||aldehyde dehydrogenase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 522
Score = 26.6 bits (56), Expect = 4.4
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = -2
Query: 462 LPFFNHPPELIGCEVHXVEVAEHITS 385
L H PEL+ C +VA+H+TS
Sbjct: 181 LQSMGHSPELVQCITCLPDVADHLTS 206
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 26.6 bits (56), Expect = 4.4
Identities = 16/46 (34%), Positives = 23/46 (50%)
Frame = -3
Query: 356 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPL 219
+ KD S + +A SA E +P +FV GTV +DLP+
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPI 376
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,141,800
Number of Sequences: 5004
Number of extensions: 34717
Number of successful extensions: 89
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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