Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N17
         (962 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    33   0.079
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    31   0.32 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.3  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    27   5.2  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 32.7 bits (71), Expect = 0.079
 Identities = 14/38 (36%), Positives = 14/38 (36%)
 Frame = +3

Query: 816 PXXXXXPPXXPXXRXXAXPXPPPGXXXXXPPRXXPPXP 929
           P     PP  P       P PPPG     PP   PP P
Sbjct: 746 PAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 30.7 bits (66), Expect = 0.32
 Identities = 26/111 (23%), Positives = 26/111 (23%), Gaps = 1/111 (0%)
 Frame = +2

Query: 605  PXAPXPXPXXXXXXXPXXXXXPPXXXXXXPXRXPPXXXPPX-APXGXXPXPXXPXXXXXX 781
            P  P P                P      P   P    PP  AP G  P P         
Sbjct: 1112 PPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPV 1171

Query: 782  XXPXXGXXPRXXXPRPXPPXXXXXPXXXXPXPPXXXXXXXXPPXXXPPPXP 934
              P  G  P        PP     P    P P         PP    PP P
Sbjct: 1172 PAPSSGIPPVPKPAAGVPP--VPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 25/112 (22%), Positives = 25/112 (22%), Gaps = 2/112 (1%)
 Frame = +2

Query: 605  PXAPXPXPXXXXXXXPXXXXXP-PXXXXXXPXRXPPXXXPPX-APXGXXPXPXXPXXXXX 778
            P  P P         P     P P      P   P    PP   P G  P P        
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPAPSGAPPVPKPSVAAPPVPVPSGAPPVPKPSVAAPP 1151

Query: 779  XXXPXXGXXPRXXXPRPXPPXXXXXPXXXXPXPPXXXXXXXXPPXXXPPPXP 934
               P     P    P    P          P P         PP    PP P
Sbjct: 1152 VPAPSGA--PPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVP 1201



 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/32 (34%), Positives = 11/32 (34%)
 Frame = +3

Query: 834  PPXXPXXRXXAXPXPPPGXXXXXPPRXXPPXP 929
            PP  P       P P  G     PP   PP P
Sbjct: 1189 PPVPPPSEAPPVPKPSVGVPPVPPPSTAPPVP 1220


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.3
 Identities = 15/49 (30%), Positives = 16/49 (32%)
 Frame = +2

Query: 788  PXXGXXPRXXXPRPXPPXXXXXPXXXXPXPPXXXXXXXXPPXXXPPPXP 934
            P     P+   P P PP     P      PP        PP   PPP P
Sbjct: 1694 PQSAAPPQMSAPTPPPPPMSVPP------PPSAPPMPAGPPSAPPPPLP 1736


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 23/112 (20%), Positives = 26/112 (23%)
 Frame = +2

Query: 599 VXPXAPXPXPXXXXXXXPXXXXXPPXXXXXXPXRXPPXXXPPXAPXGXXPXPXXPXXXXX 778
           + P +P   P       P     PP      P + PP    P  P    P P        
Sbjct: 149 IPPPSPASAPPIPSKAPPIPSSLPPPAQPAAPVKSPP--SAPSLPSAVPPMPPKVPPPPL 206

Query: 779 XXXPXXGXXPRXXXPRPXPPXXXXXPXXXXPXPPXXXXXXXXPPXXXPPPXP 934
              P      R   P    P     P      P         P    PP  P
Sbjct: 207 SQAPVANTSSR---PSSFAPPAGHAPNVTSESPKFPNRGPSIPSASVPPVPP 255


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 902,738
Number of Sequences: 5004
Number of extensions: 7873
Number of successful extensions: 57
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 37
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 493304942
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)