Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N16
         (912 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces pom...    35   0.014
SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces pom...    28   2.1  
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       26   8.5  
SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|c...    26   8.5  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    26   8.5  

>SPCC162.03 |||short chain dehydrogenase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 292

 Score = 35.1 bits (77), Expect = 0.014
 Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
 Frame = +2

Query: 338 IKCDVGDERQLASAYKQVLDKYKRLDGVINSAAVLSVDD-NSFN-----RMIDINFTGTV 499
           +K DV D + + +A+K    ++  +D VIN+A    V +  S+N     R +++NF G  
Sbjct: 52  LKLDVTDVKSVETAFKDAKRRFGNVDIVINNAGYGLVGEFESYNIEEMHRQMNVNFWGVA 111

Query: 500 NSTLKALDIM 529
             T +AL++M
Sbjct: 112 YITKEALNLM 121


>SPAC1039.05c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 781

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 16/65 (24%), Positives = 29/65 (44%)
 Frame = -3

Query: 664 RAHXNAEL*YRCFSSGVNR*MAGEIKSK*GRYIHYNTARTAFICPHNIERFQSTIHCARK 485
           RA+   ++ Y+C   G  +    +  ++  R+   +T   AFICPH    F  +    R 
Sbjct: 8   RAYQEGDIRYKCDFQGCTKSFTRKEHAR--RHFRSHTNSKAFICPHCSSSFTRSDVLNRH 65

Query: 484 IDINH 470
           ++  H
Sbjct: 66  VNQKH 70


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 16/55 (29%), Positives = 28/55 (50%)
 Frame = +2

Query: 341 KCDVGDERQLASAYKQVLDKYKRLDGVINSAAVLSVDDNSFNRMIDINFTGTVNS 505
           +CD+G   +LA     +L  Y +LD  +    VL V   +  + I+  + GT++S
Sbjct: 158 QCDIGFNNRLAIHNTLLLSSYTKLDARL-KPMVLLVKHWAKRKQINSPYFGTLSS 211


>SPBC25B2.09c |||arginine-tRNA ligase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 127 LKTNKLHHIYMLLVSVDSDAVHMYXKI 47
           LK+N + H+Y + V V++DA     KI
Sbjct: 210 LKSNPIRHLYDVYVKVNADATEEDEKI 236


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 25.8 bits (54), Expect = 8.5
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 160 IHKTLHEIRCHLKTNKLHHIYMLLVSVDSDAVH 62
           IH+ LH    +   +KLHH +++     S A H
Sbjct: 169 IHRALHHRWLYAPLHKLHHKWIVPTPYSSHAFH 201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,818,516
Number of Sequences: 5004
Number of extensions: 49156
Number of successful extensions: 135
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 134
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 462505890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)