Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N15
         (836 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces po...    30   0.47 
SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    30   0.47 
SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    28   1.4  
SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr 3|||M...    27   3.3  
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p...    27   4.4  
SPAC750.05c |||S. pombe specific 5Tm protein family|Schizosaccha...    26   5.8  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    26   7.6  
SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces pom...    26   7.6  

>SPCC663.05c |cia1||histone chaperone Cia1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 262

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -3

Query: 336 DAAEERDEQHYDANRDDKDSRGEGVWRQEERD 241
           DA EE +E+  D   ++ D  GEG   +EE D
Sbjct: 173 DADEEEEEEEADEMEEEFDEEGEGDEEEEEED 204


>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 29.9 bits (64), Expect = 0.47
 Identities = 16/63 (25%), Positives = 31/63 (49%)
 Frame = -3

Query: 429 GSDGRRDLQNEHDAKDHCENVDQAGTLFQGTDAAEERDEQHYDANRDDKDSRGEGVWRQE 250
           G++   D  N +D K+  +NV++        +  EE DE+  + + +D+D  G G  ++ 
Sbjct: 80  GNENEVDNVNNNDKKEDEDNVEENEEEADANEE-EEEDEEDDEEDEEDEDESGGGRRKRA 138

Query: 249 ERD 241
             D
Sbjct: 139 RHD 141


>SPAC4H3.12c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 101

 Score = 28.3 bits (60), Expect = 1.4
 Identities = 14/52 (26%), Positives = 28/52 (53%)
 Frame = +1

Query: 40  IWFTVILIRNKRIFLFVIHQYVAKMTQQKELGMKCIKYMLLCITAIFVLTSA 195
           I   +IL  N  + +F +++ +A   +      KC  Y+L C++ + +L+SA
Sbjct: 28  ILLKIILFLNTIVCIFYVYK-IALCNEYIRFLAKCFLYILRCMSTVSLLSSA 78


>SPCC188.09c |||glycoprotein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 609

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +1

Query: 562 DSYMDWHAVDPPTGGTGISFANLTVPEFV 648
           D+Y  WHA +  TG    S  +LT   +V
Sbjct: 527 DTYAYWHATNGQTGIASFSMGSLTADTYV 555


>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 539

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 19/91 (20%), Positives = 39/91 (42%)
 Frame = +1

Query: 85  FVIHQYVAKMTQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFLSPY 264
           F+  QY+AK+       +   + + +CI + F+ T  L  +  +    I+   +F  +P+
Sbjct: 389 FLEKQYMAKLDANNGKSVPEWRLVGMCIASPFIPTGLLIFAWTSFPRLIWIGPAFSGAPF 448

Query: 265 AFSPAIFVIAIGVIMLFVSLFGCIGALKEST 357
            +   +F  +    ++ V    C  AL   T
Sbjct: 449 GYGMVLFYFSANNYLIDVYQNYCASALAAKT 479


>SPAC750.05c |||S. pombe specific 5Tm protein
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 344

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 27/136 (19%), Positives = 60/136 (44%), Gaps = 8/136 (5%)
 Frame = +1

Query: 76  IFLFVIHQYVAKMTQQKELGMKCIKYMLLCITAIFVLTSALTISVGTTIYAIYHDISFFL 255
           IFLF ++Q + +  ++     +CIKY      +++ +   L  +    ++ IY  + F +
Sbjct: 136 IFLFALNQTLQECIEEYVFSSECIKYRQ--FYSVYEIIDFLRTNF-YRLFVIYCALGFGI 192

Query: 256 S----PYAFSPAIFVIAIGVIMLFVSLFGCIGALKESTCLV--NIFAVI--LSIVFILEI 411
           +     Y     I ++     + ++SL+  +  + E   ++   +F  I   SI  +L+ 
Sbjct: 193 TRTVPKYLMIKGISIVIALCSVYWISLYKDVYVVSEIFDMIQYEVFPAIWVYSICHLLKQ 252

Query: 412 AAAITAYSLRSEVSQF 459
             ++T Y   S+   F
Sbjct: 253 CTSVTTYENASKARFF 268


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -1

Query: 722 NRWHRSYGTXQSSLHRRQSCGT 657
           N +H SY   QS + R+ SC T
Sbjct: 101 NSFHNSYSRNQSPISRKSSCVT 122


>SPCC1259.10 |pgp1||metallopeptidase Pgp1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 412

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/52 (23%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -3

Query: 252 EERDVMVDRVN-RSTHGDRQCRC*NKNRCYTQQHVFNALHPQLLLLSHFCNV 100
           ++  V V R +  S+H   +  C N +R  ++   +  +HP +++  H  N+
Sbjct: 49  DDTSVSVVRTSDSSSHCQNEIICLNTHRTISKYEAYGGIHPTIVIHEHQKNL 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,314,634
Number of Sequences: 5004
Number of extensions: 66792
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 412451140
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)