Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N14
         (950 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.034
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    32   0.10 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.55 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    26   6.8  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.034
 Identities = 14/34 (41%), Positives = 14/34 (41%)
 Frame = +1

Query: 478 PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPPLP 579
           P PPP      PPPP          P  PPPP P
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 30.7 bits (66), Expect = 0.31
 Identities = 13/35 (37%), Positives = 13/35 (37%)
 Frame = +1

Query: 478 PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPPLPP 582
           PPPPP      P P              PPPP PP
Sbjct: 733 PPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPP 767



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/35 (34%), Positives = 12/35 (34%)
 Frame = +1

Query: 478 PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPPLPP 582
           PPPPP       P P              PPP PP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPP 766



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 10/19 (52%), Positives = 10/19 (52%)
 Frame = +1

Query: 316 PPPXXFXGXXPXGXPPPGV 372
           PPP    G  P   PPPGV
Sbjct: 752 PPPAPIMGGPPPPPPPPGV 770


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 32.3 bits (70), Expect = 0.10
 Identities = 15/34 (44%), Positives = 15/34 (44%)
 Frame = +1

Query: 478  PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPPLP 579
            PPPPP       PPP          P  PPPPLP
Sbjct: 1707 PPPPPMSV----PPPPSAPPMPAGPPSAPPPPLP 1736


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.55
 Identities = 12/32 (37%), Positives = 12/32 (37%)
 Frame = +1

Query: 478 PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPP 573
           PPPPP        PP          P  PPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPP 343



 Score = 27.5 bits (58), Expect = 2.9
 Identities = 11/34 (32%), Positives = 13/34 (38%)
 Frame = +1

Query: 478 PPPPPXXXXXXPPPPXXXXXKXXXXPXXPPPPLP 579
           PPPP         PP     +    P  PPP +P
Sbjct: 363 PPPPRSAPSTGRQPPPLSSSRAVSNPPAPPPAIP 396



 Score = 26.6 bits (56), Expect = 5.1
 Identities = 13/37 (35%), Positives = 14/37 (37%), Gaps = 2/37 (5%)
 Frame = +1

Query: 478 PPPPPXXXXXXPP--PPXXXXXKXXXXPXXPPPPLPP 582
           P PPP       P  PP     +    P   PP LPP
Sbjct: 389 PAPPPAIPGRSAPALPPLGNASRTSTPPVPTPPSLPP 425


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 26.2 bits (55), Expect = 6.8
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +1

Query: 487 PPXXXXXXPPPPXXXXXKXXXXPXXPPPPLPP 582
           PP      PPPP          P  PPPP PP
Sbjct: 5   PPGNPPPPPPPPGFEP------PSQPPPPPPP 30


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,482,892
Number of Sequences: 5004
Number of extensions: 20000
Number of successful extensions: 128
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 485316198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)