Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N10
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    29   0.67 
SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|ch...    29   0.88 
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    28   1.5  
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo...    27   4.7  
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   4.7  
SPAC8E11.01c ||SPAC959.01|beta-fructofuranosidase|Schizosaccharo...    27   4.7  
SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.2  

>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 5/71 (7%)
 Frame = -2

Query: 602 SRSDGMTISSMVECVTSLTYWLIVAAEEIVSSKDRTLT----PQTPVFCTSTWNFSCTI- 438
           SR     + + +      TYW+I    E  ++K RT       QT   C S  NFS  + 
Sbjct: 783 SRDSRSAVRNYINFSNCFTYWIINCILEKKNTKARTAVISFFIQTAYKCLSLQNFSTLMS 842

Query: 437 ILSSTNKAELF 405
           I+S+ N A ++
Sbjct: 843 IVSALNSAPIY 853


>SPCC1183.05c |lig4||DNA ligase Lig4|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 923

 Score = 29.1 bits (62), Expect = 0.88
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +3

Query: 138 LENRRRVLQKVIVRILQRLS 197
           LE+RRR+L+KVIVR   R+S
Sbjct: 407 LESRRRILEKVIVRESHRMS 426


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 25/84 (29%), Positives = 38/84 (45%), Gaps = 1/84 (1%)
 Frame = -2

Query: 629 ASINTRITPSRSDGMTISSMVECVTSLTYWLIVAAEEIVSSKDRTLTPQT-PVFCTSTWN 453
           +S ++  + S S    ISS     +S T      +    SS   T T  T     +S+ +
Sbjct: 257 SSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSS 316

Query: 452 FSCTIILSSTNKAELFSSVPTAVS 381
           FS T+  SS + +  FSS PT+ S
Sbjct: 317 FSSTLSSSSMSSSSSFSSSPTSSS 340


>SPBC244.02c |||U3 snoRNP-associated protein Utp6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 488

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 15/66 (22%), Positives = 34/66 (51%)
 Frame = +1

Query: 154 AYFKRSLYEFSNDLAVRINYETDSHFVMSGLSAWTLISALSFGATDETLQEIYQVARLHP 333
           ++F ++L+  S+  A   +     H ++  ++A+  +  L     D++LQEIY+ A++  
Sbjct: 421 SFFVKTLHAISSSSAAESSIALALHMLV--INAFQSMEKLKILTFDDSLQEIYKEAQIQS 478

Query: 334 HKCFNN 351
               +N
Sbjct: 479 GTFMSN 484


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 10/27 (37%), Positives = 17/27 (62%)
 Frame = +1

Query: 502 SFDDTISSAATINQYVNEVTHSTIEEI 582
           S DD +SS   I+ + N++TH T+  +
Sbjct: 430 SLDDHLSSKKPISYFSNKLTHQTLPNV 456


>SPAC8E11.01c
           ||SPAC959.01|beta-fructofuranosidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 508

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)
 Frame = +1

Query: 538 NQYVNEVTHSTIEEIVIPSDLEGVILVLIDALYFKGAWKTQXPY 669
           + Y+ E+  + ++  +I   L+G I+ L +A YFKG    Q  Y
Sbjct: 442 DNYILEI-EAVVDHSIIEVYLQGGIMCLTNAYYFKGDEPLQYYY 484


>SPBC83.19c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 119

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = -1

Query: 504 RQNFDPTNTSFLHVHLEFFLHDHPLVNEQS*AFLQRPDGSFLLIP 370
           + NF+    +  H+HL  + H H   + QS  ++  P+  F   P
Sbjct: 22  KANFESIRINLQHMHLYHYEHIHLFTSSQS--YMYHPNARFSYSP 64


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,475,141
Number of Sequences: 5004
Number of extensions: 72906
Number of successful extensions: 239
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 239
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)