Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N08
         (913 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   1.9  
AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.        22   5.8  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   7.6  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 510 PPPPPPP 530
           PPPPPPP
Sbjct: 731 PPPPPPP 737


>AY008296-1|AAG22858.1|  556|Tribolium castaneum Dorsal protein.
          Length = 556

 Score = 22.2 bits (45), Expect = 5.8
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = +1

Query: 457 PPXKXPPPPAGXAVXFXGPPPXPPXTXPXXPXPPXXGGXSPPXPG 591
           P  K P P  G       P   P    P  P  P      PP  G
Sbjct: 393 PRDKAPSPYGGQMFEAPIPNVSPHYVTPTPPEAPLFQNVLPPIGG 437


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +2

Query: 461 PXXXPPPPRGXRXXFXAPPPXPPXXXPPPPXP 556
           P   PPPP      +    P P    PP   P
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIP 190


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.312    0.152    0.543 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 126,385
Number of Sequences: 336
Number of extensions: 3309
Number of successful extensions: 7
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25444518
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.6 bits)