Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N05
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun...    29   0.67 
SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr 3|...    28   2.0  
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce...    27   2.7  
SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr 1|...    27   3.6  
SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein Vps1|Schizo...    27   4.7  
SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces pombe...    27   4.7  
SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces p...    27   4.7  

>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 214

 Score = 29.5 bits (63), Expect = 0.67
 Identities = 18/65 (27%), Positives = 26/65 (40%)
 Frame = +1

Query: 505 DVSQYTPEEIVVKTVDXKLLVHAKHEEKSDTKSVYREYNREFLLPKGTNPEAIKSSLSGT 684
           +VS Y PE       D   L  +  EE  + + +  E   E+   K   P+A+  SL   
Sbjct: 74  EVSAYGPEGAAAAEEDEIDLFGSDEEEDPEAERIKAERVAEYNKKKAAKPKAVHKSLVTL 133

Query: 685 VCLPW 699
              PW
Sbjct: 134 DVKPW 138


>SPCC757.07c |ctt1|cta1|catalase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 512

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/31 (45%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = +1

Query: 238 GDFSVIDTEFSS-IRERFDAEMRKMEEEMSK 327
           G F+ +D+E    IRE  +AE++KMEE+  K
Sbjct: 468 GVFTRVDSELGRRIREATEAEVKKMEEKAPK 498


>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1036

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 32/102 (31%), Positives = 46/102 (45%), Gaps = 1/102 (0%)
 Frame = +2

Query: 329 SDQNS*TEKATISSRAQLARRHLHSIVTADSLP-SPVTGIA*TRRSFKTRVTARLSSFAL 505
           S  NS T  AT +S   L+  +  +  +A S P S V     T  S  T +T+ ++S   
Sbjct: 426 SSANSTT--ATSASSTPLSSVNSTTATSASSTPLSSVNSTTATSAS-STPLTS-VNSTTA 481

Query: 506 MSASILPKRSLLRLSTTNYWSTPNTRRNLIRNLCTENTTGSF 631
            SAS  P  S+   S T+  STP T  N   +    +T  S+
Sbjct: 482 TSASSTPLTSVNSTSATSASSTPLTSANSTTSTSVSSTAPSY 523


>SPAC9E9.07c |ypt2||GTPase Ypt2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 200

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +1

Query: 460 LIQDEGDGKT-LKLRFDVSQYTPEEIVVKTVDXKL 561
           LI D G GK+ L LRF    +TP  I    +D K+
Sbjct: 14  LIGDSGVGKSCLLLRFSEDSFTPSFITTIGIDFKI 48


>SPAC767.01c |vps1|SPAC9G1.14c|dynamin family protein
           Vps1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 678

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 14/49 (28%), Positives = 28/49 (57%)
 Frame = -2

Query: 668 DLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWTSNLXSTVLTTISSG 522
           +L + G  P+G+ +S++ +L TDF +++ + +   S   S   T +S G
Sbjct: 327 ELHSLGDTPVGDNSSIVLNLITDFCNEYRTVVDGRSEELSA--TELSGG 373


>SPBC17G9.04c |nup85||nucleoporin Nup85|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 675

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 16/68 (23%), Positives = 30/68 (44%)
 Frame = -2

Query: 743 RNVPVRDGELWQWRFHGKHTVPDSEDLMASGFVPLGNKNSLLYSLYTDFVSDFSSCLAWT 564
           +N P+ +G+L  WR  G+         +  G   + NK     +L +D   +  S L + 
Sbjct: 15  QNAPIENGKLNDWRSKGRTVAFKLHPFLRKGLAYINNKEFDENTLKSDKFEEVES-LVYE 73

Query: 563 SNLXSTVL 540
            +  ST++
Sbjct: 74  FSTPSTLI 81


>SPCC1020.13c ||SPCC14G10.05|phospholipase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 669

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +1

Query: 568 HAKHEEKSDTKSVYREYNREFLLPKGTNP 654
           +  H ++S  KSV RE NR + L K  NP
Sbjct: 357 YMSHHKESIIKSVIREANRVYHLWKDCNP 385


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,041,888
Number of Sequences: 5004
Number of extensions: 59425
Number of successful extensions: 167
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)