Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_N03
         (859 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    27   2.6  
SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   2.6  
SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha sub...    26   6.0  
SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces pomb...    26   6.0  
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    26   7.9  
SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit Smc6|Schizosac...    26   7.9  

>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = +2

Query: 191 QLYMSVVIGEY-EXAIAKCSEYLKEKKGEVIKEAVKRLIE 307
           Q+++++V+  Y   A+    EYL+EK    I +  K ++E
Sbjct: 556 QIFINIVLPNYIRAALVVAKEYLREKANADINDLTKDMLE 595


>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 15/48 (31%), Positives = 23/48 (47%)
 Frame = +2

Query: 560 TTEFTSRSCPPRTNST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSP 703
           +T  TS   PP T+   ++ T        ++T + P T  NTT T +P
Sbjct: 63  STNITSIVPPPSTSHNSTTTTVPPTTSMNTTTTVPPTTSLNTTTTTAP 110



 Score = 27.1 bits (57), Expect = 3.4
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)
 Frame = +2

Query: 572 TSRSCPPRT--NST*SSITRKVLVMTVSSTVIAPLTPSNTTGTLSPSMYESDVMF 730
           T+ + PP T  NST + +     V T  +TV+ P T  NTT  + P+ + +   F
Sbjct: 105 TTTTAPPTTHVNSTTTVVPPTTHVNT--TTVVPPTTHVNTTTVVPPTTHANTTSF 157


>SPAC26F1.03 |pda1||pyruvate dehydrogenase e1 component alpha
           subunit Pda1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -2

Query: 684 VFEGVSGAITVDDTVIT 634
           V  G+ GAIT+DD++IT
Sbjct: 117 VAAGIEGAITLDDSIIT 133


>SPCC18.11c |sdc1||Dpy-30 domain protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 109

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +2

Query: 236 AKCSEYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQFM 349
           A   +YL EK   V+ E +K L  +   N + F  QF+
Sbjct: 5   APARQYLNEKVTPVLLEGMKILARDRPENPLQFLGQFL 42


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
            |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +2

Query: 248  EYLKEKKGEVIKEAVKRLIENGKRNTMDFAYQFMDK 355
            +Y KE + EV+    + L ENGK N    AY+ + K
Sbjct: 923  KYDKEAQKEVLIIFAQYLRENGKSNEAAIAYESVGK 958


>SPCC5E4.06 |smc6|rad18|Smc5-6 complex SMC subunit
           Smc6|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1140

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 429 LINKRDHHALKLIDQQNHNKIAFGDSKDKTS 521
           L+ K+D  A K+ DQ  H K+     +DK S
Sbjct: 496 LLTKKDSIANKISDQSEHLKVLEDVQRDKVS 526


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,132,352
Number of Sequences: 5004
Number of extensions: 60751
Number of successful extensions: 233
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 426466470
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)