Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M23
         (948 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    31   0.31 
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    29   0.72 
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    27   3.9  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 30.7 bits (66), Expect = 0.31
 Identities = 18/65 (27%), Positives = 19/65 (29%), Gaps = 4/65 (6%)
 Frame = -3

Query: 790 PPPPGGXXXXXXXXXGGGGPXXXXXPPPPPXXXXXXXXPXGGXXXFXXAPPP----PAXX 623
           PPPP            G        PPPPP        P          PPP    P+  
Sbjct: 314 PPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTG 373

Query: 622 XXPPP 608
             PPP
Sbjct: 374 RQPPP 378



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 18/66 (27%), Positives = 18/66 (27%), Gaps = 3/66 (4%)
 Frame = -2

Query: 791 PPPPXGXGXXXXXXXGGGGPXXXXPXPPPPXXXXXXXXPXGGXXXFXXXAPPPXXGXP-- 618
           PPPP           G G      P PPPP                    PPP    P  
Sbjct: 313 PPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPST 372

Query: 617 -XXPPP 603
              PPP
Sbjct: 373 GRQPPP 378


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 29.5 bits (63), Expect = 0.72
 Identities = 20/73 (27%), Positives = 21/73 (28%)
 Frame = -2

Query: 719 PXPPPPXXXXXXXXPXGGXXXFXXXAPPPXXGXPXXPPPXGGXXXXXPXXXPXXXXXXXX 540
           P PPPP        P           P P  G P  PPP  G     P   P        
Sbjct: 732 PPPPPPAVIVPTPAPA----PIPVPPPAPIMGGPPPPPPPPGVAGAGP---PPPPPPPPA 784

Query: 539 XGGGGXKXXPPXP 501
              GG +   P P
Sbjct: 785 VSAGGSRYYAPAP 797



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 12/26 (46%), Positives = 12/26 (46%), Gaps = 3/26 (11%)
 Frame = -1

Query: 297 PXXXFFXGXPPPPPX---GGXXPPPP 229
           P      G PPPPP     G  PPPP
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 9/14 (64%), Positives = 9/14 (64%)
 Frame = -1

Query: 270 PPPPPXGGXXPPPP 229
           PPP P  G  PPPP
Sbjct: 752 PPPAPIMGGPPPPP 765


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/23 (56%), Positives = 13/23 (56%), Gaps = 1/23 (4%)
 Frame = +3

Query: 447 GGGGGGFXXPXKXPPP-PRGXGG 512
           GGG GGF      PPP P G GG
Sbjct: 187 GGGFGGFGGGSGGPPPGPGGFGG 209



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -2

Query: 536 GGGGXKXXPPXPPGGGGXFXG 474
           G GG    PP  PGG G F G
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGG 212


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.156    0.545 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,909,716
Number of Sequences: 5004
Number of extensions: 33308
Number of successful extensions: 84
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 59
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 483319012
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)