Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M19
         (859 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical...    29   4.2  
AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical...    29   4.2  
AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical ...    29   4.2  
AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical ...    29   5.6  
U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical pr...    28   7.4  
AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.      28   7.4  
AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.      28   7.4  
AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.      28   7.4  

>AL110487-11|CAC42369.1|  624|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12c protein.
          Length = 624

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AL110487-10|CAC42368.1|  623|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12b protein.
          Length = 623

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AL110487-9|CAB54435.1|  626|Caenorhabditis elegans Hypothetical
           protein Y39E4B.12a protein.
          Length = 626

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+ +Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKKYFEKLGTYDPGFD 374


>AL032657-9|CAA21736.1|  829|Caenorhabditis elegans Hypothetical
           protein Y47H9C.9 protein.
          Length = 829

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 15/60 (25%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -2

Query: 597 SGTXKKXRTKAHSSVSRRSNRKSTLKFTVEFSSC*YQ--VRSPGSGSSNRTRHRSGDVCK 424
           S T  +   +A S+++   N K+ L   +  +   Y   +++ G G  N+TR R  ++ K
Sbjct: 605 SMTVNRIEMEAESTIAHLENEKNKLMEDLRLAQAEYDSLIQTAGGGGQNKTRKRLEEIWK 664


>U29612-1|AAA68801.1|  387|Caenorhabditis elegans Hypothetical
           protein C09B8.3 protein.
          Length = 387

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -2

Query: 189 CFLSSCTRPQXVNVLASRTNAEDNQS 112
           CFL+S   PQ   +LA R +A  NQS
Sbjct: 77  CFLNSTGPPQIFLILAKRIHAASNQS 102


>AF031837-1|AAC13673.1|  624|Caenorhabditis elegans GLY5c protein.
          Length = 624

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


>AF031836-1|AAC13672.1|  626|Caenorhabditis elegans GLY5b protein.
          Length = 626

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


>AF031835-1|AAC13671.1|  623|Caenorhabditis elegans GLY5a protein.
          Length = 623

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +2

Query: 191 GFEENLMRNWVCLVEHESSRDTSKTNTNRNGSKDYGLFQINDRYWCSKGA-SPGKD 355
           GF+  L  NW  + E +    T   +  R+ +   GLF I+  Y+   G   PG D
Sbjct: 319 GFDWGLQFNWHSIPERDRKNRTRPIDPVRSPTMAGGLFSIDKEYFEKLGTYDPGFD 374


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,451,606
Number of Sequences: 27780
Number of extensions: 206996
Number of successful extensions: 547
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 547
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2139963672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)