Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M16
         (880 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical pr...    29   5.8  
DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.     29   5.8  
AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transpor...    29   5.8  

>Z74041-8|CAA98519.2|  610|Caenorhabditis elegans Hypothetical
           protein T03F7.1 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 638 NEAILXLCYVNVLQHXXIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
           N  I     V VL H  IH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>DQ482732-1|ABF20555.1|  610|Caenorhabditis elegans SNF-11 protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 638 NEAILXLCYVNVLQHXXIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
           N  I     V VL H  IH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


>AY529124-1|AAT02634.1|  610|Caenorhabditis elegans GABA transporter
           protein protein.
          Length = 610

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = -3

Query: 638 NEAILXLCYVNVLQHXXIHKHFRVYFIRSRNNETVAIRALDNSDVEGIQE 489
           N  I     V VL H  IH++ + +F+  + N TV   A D S V  ++E
Sbjct: 152 NRTIAEFFNVKVLTHDHIHEYKKQFFVGEKMNWTVC-SAADLSVVSPVKE 200


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,329,015
Number of Sequences: 27780
Number of extensions: 179372
Number of successful extensions: 240
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 239
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)