Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M15
         (841 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomy...    29   0.82 
SPAC25G10.05c |his1||ATP phosphoribosyltransferase |Schizosaccha...    26   7.6  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    26   7.6  
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch...    26   7.6  

>SPAC9.09 |met26||homocysteine methyltransferase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 764

 Score = 29.1 bits (62), Expect = 0.82
 Identities = 13/56 (23%), Positives = 28/56 (50%)
 Frame = +3

Query: 339 YPESALALMRRVAEFKRDNAHLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRRVLI 506
           +P + +    +  E +        GL+ + E DAF+  ++ +V+K ++  G  VL+
Sbjct: 437 FPTTTIGSFPQTKEIRVTRNRFAKGLISQEEYDAFIRKEISDVVKFQEEVGLDVLV 492


>SPAC25G10.05c |his1||ATP phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 310

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 16/33 (48%), Positives = 17/33 (51%)
 Frame = +3

Query: 399 HLLDGLLPEHEKDAFLDHKVVNVMKGRDNKGRR 497
           HL D LL    K   L    VNV+KG D K RR
Sbjct: 6   HLEDRLLFAVPKKGRLYESCVNVLKGSDIKFRR 38


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 12/21 (57%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
 Frame = -2

Query: 474 LSSHSPLYGL-ERRPSHVQEV 415
           L SH+P+YGL +RRPS +  V
Sbjct: 43  LLSHAPMYGLGQRRPSFLPGV 63


>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
           Zds1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 938

 Score = 25.8 bits (54), Expect = 7.6
 Identities = 15/51 (29%), Positives = 28/51 (54%), Gaps = 2/51 (3%)
 Frame = +3

Query: 291 PDDDEILTIFLRPC--KWYPESALALMRRVAEFKRDNAHLLDGLLPEHEKD 437
           P+D    +I  +P   +  PE+A+AL   V E K +++ +L   +PE + +
Sbjct: 480 PEDKSENSIASKPSATEGIPENAIALQSSVPENKAEDSVVLKSSVPEDKSE 530


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,641
Number of Sequences: 5004
Number of extensions: 53240
Number of successful extensions: 144
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 414453330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)