Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M14
         (865 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein Ubi2|...    46   5e-06
SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein Ubi1|Schiz...    46   5e-06
SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein Ubi3|Schi...    46   5e-06
SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr 2|||M...    46   5e-06
SPAC589.10c |||ribomal-ubiquitin fusion protein Ubi5|Schizosacch...    46   5e-06
SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like pro...    31   0.28 

>SPAC1805.12c |uep1|ubi2|ribosomal-ubiquitin fusion protein
           Ubi2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 42  RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPAC11G7.04 |ubi1||ribosomal-ubiquitin fusion protein
           Ubi1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 128

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 42  RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPAC6G10.11c |ubi3||ribosomal ubiquitin fusion protein
           Ubi3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 42  RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC337.08c |ubi4||ubiquitin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 382

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 42  RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 118 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 152



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 194 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 228



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 270 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 346 RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 380


>SPAC589.10c |||ribomal-ubiquitin fusion protein
           Ubi5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 150

 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 24/35 (68%), Positives = 24/35 (68%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL FAG  L  GRTLS  NIQ  S LHLVL LRGG
Sbjct: 42  RLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76


>SPBC12D12.08c |ned8|nedd8, ubl1, SPBC24C6.01c|ubiquitin-like
           protein modifier Ned8|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 78

 Score = 30.7 bits (66), Expect = 0.28
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +1

Query: 82  RLXFAGXXLXAGRTLSXXNIQXXSXLHLVLXLRGG 186
           RL +AG  +   +     +++  S LHLVL LRGG
Sbjct: 42  RLIYAGKQMADDKNAESYHLEGGSVLHLVLALRGG 76


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,683,693
Number of Sequences: 5004
Number of extensions: 14902
Number of successful extensions: 23
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)