Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M12
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    36   0.008
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    31   0.29 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    29   0.90 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   2.7  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    27   3.6  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    26   8.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 35.9 bits (79), Expect = 0.008
 Identities = 21/65 (32%), Positives = 23/65 (35%), Gaps = 6/65 (9%)
 Frame = +2

Query: 584 PPXXXPXXXFFKKXP-PPPXGXFFFFXXXKKKXXXPPPPPXKKKKXXPPPXG-----XXX 745
           P    P      K P PPP            K   PPPPP  ++    PP G        
Sbjct: 277 PVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSL 336

Query: 746 PPPPP 760
           PPPPP
Sbjct: 337 PPPPP 341



 Score = 34.3 bits (75), Expect = 0.024
 Identities = 25/105 (23%), Positives = 28/105 (26%), Gaps = 6/105 (5%)
 Frame = +3

Query: 462 PXKKKPXXXGKKKXPPXXFFXIPPGGXXGGXKNFFXXKXXPPPXXPPXXXFLKKXPPPPX 641
           P  + P        P       P  G      N       P    P      K   PPP 
Sbjct: 237 PSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPS 296

Query: 642 GXFFFXXXXKKKXXXPPPPXXKKKKXXPPPXG------XXPPPPP 758
                      K   PPPP   ++    PP G        PPPPP
Sbjct: 297 SRVSAAALAANKKRPPPPPPPSRRNRGKPPIGNGSSNSSLPPPPP 341



 Score = 32.7 bits (71), Expect = 0.073
 Identities = 21/66 (31%), Positives = 23/66 (34%), Gaps = 3/66 (4%)
 Frame = +2

Query: 572 KXXPPPXXXPXXXFFKKXPPPPXGXFFFFXXXKKKXXXPPPPPXKKKKXXP---PPXGXX 742
           K  PPP   P     +    PP G              PPPPP +         PP G  
Sbjct: 308 KKRPPPPPPPSR---RNRGKPPIGN-----GSSNSSLPPPPPPPRSNAAGSIPLPPQGRS 359

Query: 743 XPPPPP 760
            PPPPP
Sbjct: 360 APPPPP 365



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 16/68 (23%), Positives = 19/68 (27%), Gaps = 3/68 (4%)
 Frame = +2

Query: 581 PPPXXXPXXXFFKKXP---PPPXGXFFFFXXXKKKXXXPPPPPXKKKKXXPPPXGXXXPP 751
           PPP   P        P   P P                P PPP  +            PP
Sbjct: 253 PPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPP 312

Query: 752 PPPXXKKK 775
           PPP   ++
Sbjct: 313 PPPPPSRR 320


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 30.7 bits (66), Expect = 0.29
 Identities = 18/50 (36%), Positives = 18/50 (36%), Gaps = 3/50 (6%)
 Frame = +2

Query: 620 KXPPPPXGXFFFFXXXKKKXXXPPPPPXKK-KKXXPPPXGX--XXPPPPP 760
           K PPPP                PPP P        PPP G     PPPPP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779



 Score = 29.5 bits (63), Expect = 0.68
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +2

Query: 686 PPPPPXKKKKXXPPPXGXXXPPPPP 760
           PPPPP       PPP     PPPPP
Sbjct: 763 PPPPPPGVAGAGPPP----PPPPPP 783



 Score = 25.8 bits (54), Expect = 8.4
 Identities = 17/55 (30%), Positives = 17/55 (30%), Gaps = 8/55 (14%)
 Frame = +3

Query: 615 LKKXPPPPXGXFFFXXXXKKKXXXPPPPXXKKKKXXPPPXGX--------XPPPP 755
           LK  PPPP                PP P        PPP G          PPPP
Sbjct: 729 LKSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 29.1 bits (62), Expect = 0.90
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +2

Query: 686 PPPPPXKKKKXXPPPXGXXXPPPPPXXKKK 775
           PPPPP  +    PPP      PPPP   KK
Sbjct: 12  PPPPPGFEPPSQPPP------PPPPGYVKK 35



 Score = 28.3 bits (60), Expect = 1.6
 Identities = 13/30 (43%), Positives = 14/30 (46%)
 Frame = +2

Query: 686 PPPPPXKKKKXXPPPXGXXXPPPPPXXKKK 775
           PPPPP        PP     PPPP   KK+
Sbjct: 9   PPPPPPPP--GFEPPSQPPPPPPPGYVKKR 36


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 27.5 bits (58), Expect = 2.7
 Identities = 16/58 (27%), Positives = 17/58 (29%)
 Frame = +3

Query: 585  PPXXPPXXXFLKKXPPPPXGXFFFXXXXKKKXXXPPPPXXKKKKXXPPPXGXXPPPPP 758
            P   PP        PP P          K     PP P   +    P P    PP PP
Sbjct: 1155 PSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPP 1212



 Score = 27.1 bits (57), Expect = 3.6
 Identities = 14/45 (31%), Positives = 15/45 (33%)
 Frame = +2

Query: 626  PPPPXGXFFFFXXXKKKXXXPPPPPXKKKKXXPPPXGXXXPPPPP 760
            PP P          K     PP PP  +    P P     P PPP
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVPPPSEAPPVPKPSVGVPPVPPP 1213


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = +2

Query: 695  PPXKKKKXXPPPXGXXXPPPPP 760
            PP + +   PP      PPPPP
Sbjct: 1690 PPVRPQSAAPPQMSAPTPPPPP 1711



 Score = 26.6 bits (56), Expect = 4.8
 Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 3/28 (10%)
 Frame = +2

Query: 686  PPPPPXK---KKKXXPPPXGXXXPPPPP 760
            PPPPP          P P G    PPPP
Sbjct: 1707 PPPPPMSVPPPPSAPPMPAGPPSAPPPP 1734


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 24/72 (33%), Positives = 25/72 (34%), Gaps = 6/72 (8%)
 Frame = -2

Query: 769 FXXXGGGGGXXPXGGGXXFFFFXXGG-----GGXXXFFFXXXKKKKXPXG-GGGXFFKKX 608
           F   GGG G  P G G    F   GG     GG   F       +  P G GGG      
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFGGEGHHHGGHGGFGGGPGGFEGGPGGFGGGPGGFGG 249

Query: 607 XXGGXXGGGXXF 572
             GG  GG   F
Sbjct: 250 GLGGFGGGPGGF 261


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,265,827
Number of Sequences: 5004
Number of extensions: 40034
Number of successful extensions: 187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)