Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M11
         (900 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    57   5e-07
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    54   4e-06
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    48   2e-04
UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    40   0.065
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    40   0.086
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    35   3.3  

>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 57.2 bits (132), Expect = 5e-07
 Identities = 28/43 (65%), Positives = 28/43 (65%)
 Frame = -2

Query: 593 PFAGLLLTXSFLRYPLILWITVLPPLXELIPXXAAERPXAXSQ 465
           P    LLT SF  YPLILWITVLPPL EL P  A ERP   SQ
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERPSVASQ 61


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 29/37 (78%), Positives = 29/37 (78%)
 Frame = +2

Query: 461 LTDSLXXVVRLRXXVSAXSKXVIRLSTESGDXAGKXM 571
           LTDSL  VVRLR  VSA SK VIRLSTESGD AGK M
Sbjct: 23  LTDSLRSVVRLRRAVSAHSKAVIRLSTESGDNAGKNM 59


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 48.4 bits (110), Expect = 2e-04
 Identities = 20/25 (80%), Positives = 21/25 (84%)
 Frame = +1

Query: 391 SAXMNRPXXGERRFAYWALFRFLXH 465
           +A MNRP  GERRFAYWALFRFL H
Sbjct: 25  AALMNRPTRGERRFAYWALFRFLAH 49


>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 40.3 bits (90), Expect = 0.065
 Identities = 17/32 (53%), Positives = 20/32 (62%)
 Frame = +3

Query: 417 RGKAVCXLGALPXPXSLTXCXRSFGCGXRYQL 512
           R   +C  G +P P SLT   RSFGCG RY+L
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRL 57


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 39.9 bits (89), Expect = 0.086
 Identities = 24/57 (42%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = +3

Query: 393 CXNESAXXRGKAVCXLGALPXPXSLTXCXRSFGCGXRYQLXQ-RX*YGYPQNQGIXQ 560
           C  + A  R +AV  L ALP   S T C RS GCG           YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 22/50 (44%), Positives = 25/50 (50%)
 Frame = +1

Query: 652 TSITKXDXQXRGGETRXGL*RYPXVSPXXXPSCXSPVPTLPVXRNTCPPF 801
           TSITK D Q RGGETR    +     P   PSC        +  +TCPPF
Sbjct: 24  TSITKIDAQVRGGETRQDY-KDTRRFPLEAPSCALLFRPCRLP-DTCPPF 71


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 539,208,085
Number of Sequences: 1657284
Number of extensions: 7839077
Number of successful extensions: 16288
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14184
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15981
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)