Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M08
         (1011 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis thali...    35   2.9  
UniRef50_Q9FPQ6 Cluster: Vegetative cell wall protein gp1 precur...    34   6.7  

>UniRef50_Q9LMQ1 Cluster: F7H2.17 protein; n=2; Arabidopsis
           thaliana|Rep: F7H2.17 protein - Arabidopsis thaliana
           (Mouse-ear cress)
          Length = 1006

 Score = 35.1 bits (77), Expect = 2.9
 Identities = 22/77 (28%), Positives = 26/77 (33%)
 Frame = +1

Query: 637 LPLYPXIPSPTXIXCXPPPSXXLXPSPPNXLXTXXSRPKXXHXSXTQXVXXSPFVPXRPX 816
           +P  P  P P  + C PPPS    P PP    T  + P             +P  P  P 
Sbjct: 390 VPCSPPPPPPIPVPCPPPPSPP-PPPPPQPCITCVTAPAPPPPQPCITCVIAPASPP-PQ 447

Query: 817 XXXESXXAPAPLXPXXC 867
                  AP P  P  C
Sbjct: 448 PCITCVAAPEPPPPQPC 464


>UniRef50_Q9FPQ6 Cluster: Vegetative cell wall protein gp1
           precursor; n=14; root|Rep: Vegetative cell wall protein
           gp1 precursor - Chlamydomonas reinhardtii
          Length = 555

 Score = 33.9 bits (74), Expect = 6.7
 Identities = 25/81 (30%), Positives = 29/81 (35%)
 Frame = +1

Query: 616 PXXXTALLPLYPXIPSPTXIXCXPPPSXXLXPSPPNXLXTXXSRPKXXHXSXTQXVXXSP 795
           P   +  +P  P  PSPT     P PS  + PSP          P     S    V  SP
Sbjct: 160 PPSPSPPVPPSPAPPSPTP----PSPSPPVPPSPAPPSPAPPVPPSPAPPSPAPPVPPSP 215

Query: 796 FVPXRPXXXXESXXAPAPLXP 858
             P  P     S  +PAP  P
Sbjct: 216 APPSPPSPAPPSPPSPAPPSP 236


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 607,367,869
Number of Sequences: 1657284
Number of extensions: 9298875
Number of successful extensions: 28121
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 22263
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26924
length of database: 575,637,011
effective HSP length: 101
effective length of database: 408,251,327
effective search space used: 95939061845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)