Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M05
         (888 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ...   134   2e-32
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz...    27   4.7  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   8.2  

>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 598

 Score =  134 bits (324), Expect = 2e-32
 Identities = 76/191 (39%), Positives = 109/191 (57%), Gaps = 1/191 (0%)
 Frame = +2

Query: 233 YIIPTADAHNSEYIDAADARREWISAFTGSAGTAVVTSSQALVWTDGRYYTQFEREVDLS 412
           Y++P+ DAH+SEY   ADARR +IS F GSAG AV+  + A ++TDGRY+ Q  +++D  
Sbjct: 24  YVVPSEDAHSSEYTCDADARRAFISGFDGSAGCAVIGETSAALFTDGRYFNQASQQLD-E 82

Query: 413 AWTLMKQTLPDTPTLEKWLASNLKDGDVVGVDPQTMTRDEWTPIQTAL-KKISAQLVPIS 589
            WTLMKQ     PT E++     K  + VG+D   +T      ++ +L  K  A LV   
Sbjct: 83  NWTLMKQGFTGVPTWEEYCTQMTKCNEKVGIDSSLITFPAAKALRESLFLKSGAVLVGDH 142

Query: 590 NNLVDDVRIELGDPAPKRSHNELAPLHVRYTGRTAGEKIAELRRKMAEKKASALVLTALD 769
           +NLVD   I  G   PK    +L    ++Y G    EK+  LR  M E+K  A V++ LD
Sbjct: 143 DNLVD---IVWGASRPKEPLEKLIVQEIKYAGLGVDEKLHNLREAMKEQKIEAFVVSMLD 199

Query: 770 DIAYTLNLRGS 802
           ++A+  NLRG+
Sbjct: 200 EVAWLYNLRGA 210


>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1253

 Score = 26.6 bits (56), Expect = 4.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +2

Query: 332 AVVTSSQALVWTDGRYYTQFEREVDL 409
           AV T +  ++WT G Y+   ++E+++
Sbjct: 317 AVSTENSVMLWTTGNYHWYLKKEINI 342


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 25/95 (26%), Positives = 38/95 (40%), Gaps = 3/95 (3%)
 Frame = -2

Query: 761  PLERGPKLSSPPSSVLIPRSSL---PLFCQCSGRVMARVHCAIS*APGPQVQS*HHPRGC 591
            P    P +S+P SSV  P S+    P     +    AR   + S +   + ++    R  
Sbjct: 1242 PSSEAPSVSTPRSSVPSPHSNASPSPTSSSMASAAPARTSVSRSKSKAERHETSTSSRKS 1301

Query: 590  SKSALVER*FSLGQSVSESIRLWSSFGDPRRLRHR 486
            SKS       + G + S S R   +  D R+  HR
Sbjct: 1302 SKSGEHHHHHNEGHADSSSTRTSLAHQDSRKSLHR 1336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,217,207
Number of Sequences: 5004
Number of extensions: 64316
Number of successful extensions: 186
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 171
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)