Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M04
         (927 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub...    73   8e-14
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A...    72   1e-13
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2...    67   4e-12

>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 72.5 bits (170), Expect = 8e-14
 Identities = 33/61 (54%), Positives = 47/61 (77%)
 Frame = +2

Query: 101 LAVLGGXXXPAAADVEXXLSSVGIEADAEKLKKVITELNGKXVEXLIAAGREXLSSMPVG 280
           L  +GG   P+A+D+E  LS+VGIEA+AE+++ +I+ELNGK +E LIAAG E LS++P  
Sbjct: 9   LLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNEKLSTVPSA 68

Query: 281 G 283
           G
Sbjct: 69  G 69


>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 110

 Score = 71.7 bits (168), Expect = 1e-13
 Identities = 31/61 (50%), Positives = 47/61 (77%)
 Frame = +2

Query: 101 LAVLGGXXXPAAADVEXXLSSVGIEADAEKLKKVITELNGKXVEXLIAAGREXLSSMPVG 280
           L  +GG   P+A+D+E  LS+VGIEA++E+++ +I ELNGK ++ LIAAG E L+++P G
Sbjct: 9   LLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNEKLATVPTG 68

Query: 281 G 283
           G
Sbjct: 69  G 69


>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 110

 Score = 66.9 bits (156), Expect = 4e-12
 Identities = 29/61 (47%), Positives = 47/61 (77%)
 Frame = +2

Query: 101 LAVLGGXXXPAAADVEXXLSSVGIEADAEKLKKVITELNGKXVEXLIAAGREXLSSMPVG 280
           L  +GG   P+A+D+E  LS+VGIE+++E+++ +I EL+GK ++ LIAAG E L+++P G
Sbjct: 9   LLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNEKLATVPSG 68

Query: 281 G 283
           G
Sbjct: 69  G 69


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,486,161
Number of Sequences: 5004
Number of extensions: 13840
Number of successful extensions: 42
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 469338710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)