Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M02
         (899 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces...    97   2e-21
SPAC222.08c |||imidazoleglycerol-phosphate synthase |Schizosacch...    26   8.4  

>SPBC16G5.14c |rps3||40S ribosomal protein S3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 249

 Score = 97.5 bits (232), Expect = 2e-21
 Identities = 47/57 (82%), Positives = 51/57 (89%)
 Frame = +1

Query: 151 LNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQKRF 321
           LNEF TREL+E+GYSG EVRVTP RSEIII AT TQ VLGEKGRRIRELT++VQKRF
Sbjct: 23  LNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGEKGRRIRELTALVQKRF 79


>SPAC222.08c |||imidazoleglycerol-phosphate synthase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 10/15 (66%), Positives = 12/15 (80%)
 Frame = +2

Query: 38  PLHTFGPSFSRAPVA 82
           PLH+F  +F RAPVA
Sbjct: 158 PLHSFSATFIRAPVA 172


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,565,907
Number of Sequences: 5004
Number of extensions: 20716
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)