Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M02
         (899 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal prot...   109   4e-24
BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p pro...   109   4e-24
AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p pro...   109   4e-24
AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA...   109   4e-24
X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal prot...   105   8e-23

>L13690-1|AAA28875.1|  246|Drosophila melanogaster ribosomal protein
           S3/AP endonucleaseDNA repair protein protein.
          Length = 246

 Score =  109 bits (263), Expect = 4e-24
 Identities = 53/64 (82%), Positives = 58/64 (90%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LNEFLTRELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQ
Sbjct: 17  GIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQ 76

Query: 313 KRFN 324
           KRFN
Sbjct: 77  KRFN 80


>BT024258-1|ABC86320.1|  253|Drosophila melanogaster IP15838p
           protein.
          Length = 253

 Score =  109 bits (263), Expect = 4e-24
 Identities = 53/64 (82%), Positives = 58/64 (90%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LNEFLTRELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQ
Sbjct: 24  GIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQ 83

Query: 313 KRFN 324
           KRFN
Sbjct: 84  KRFN 87


>AY118971-1|AAM50831.1|  246|Drosophila melanogaster LD47488p
           protein.
          Length = 246

 Score =  109 bits (263), Expect = 4e-24
 Identities = 53/64 (82%), Positives = 58/64 (90%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LNEFLTRELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQ
Sbjct: 17  GIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQ 76

Query: 313 KRFN 324
           KRFN
Sbjct: 77  KRFN 80


>AE014297-3319|AAF56129.1|  246|Drosophila melanogaster CG6779-PA
           protein.
          Length = 246

 Score =  109 bits (263), Expect = 4e-24
 Identities = 53/64 (82%), Positives = 58/64 (90%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LNEFLTRELAEDGYSGVEVRVTP R+EIIIMAT+TQ VLGEKGRRIRELT++VQ
Sbjct: 17  GIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGRRIRELTAMVQ 76

Query: 313 KRFN 324
           KRFN
Sbjct: 77  KRFN 80


>X72921-1|CAA51425.1|  246|Drosophila melanogaster ribosomal protein
           S3 protein.
          Length = 246

 Score =  105 bits (252), Expect = 8e-23
 Identities = 51/64 (79%), Positives = 56/64 (87%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LNEFLTRELAEDGYSGVEVRVTP  +EIIIMAT+TQ VL EKGRRIRELT++VQ
Sbjct: 17  GIFKAELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGRRIRELTAMVQ 76

Query: 313 KRFN 324
           KRFN
Sbjct: 77  KRFN 80


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,821,023
Number of Sequences: 53049
Number of extensions: 250420
Number of successful extensions: 666
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 666
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4382549442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)