Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_M02
         (899 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal prote...   101   9e-22

>U39851-9|AAF99870.1|  247|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 3 protein.
          Length = 247

 Score =  101 bits (241), Expect = 9e-22
 Identities = 48/63 (76%), Positives = 55/63 (87%)
 Frame = +1

Query: 133 GFSRQXLNEFLTRELAEDGYSGVEVRVTPIRSEIIIMATRTQSVLGEKGRRIRELTSVVQ 312
           G  +  LN FL +ELAEDGYSGVEVR TP R+E+IIMATRTQ+VLGE+GRRI+ELTSVVQ
Sbjct: 17  GIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGRRIKELTSVVQ 76

Query: 313 KRF 321
           KRF
Sbjct: 77  KRF 79


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,963,239
Number of Sequences: 27780
Number of extensions: 123943
Number of successful extensions: 294
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 291
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 294
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)