Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L24
         (920 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ...    31   0.23 
SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription te...    28   2.1  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    27   3.7  
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo...    27   4.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   6.5  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    26   6.5  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   8.6  

>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 255

 Score = 31.1 bits (67), Expect = 0.23
 Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 2/54 (3%)
 Frame = +3

Query: 135 MLAASAGVV--ELSADTSNQDLEEXLYNSILTGDYDSAVRQSLEYESQGKGSII 290
           ++ A+AG+    LS +  N+D+   +    L G Y +A      ++ QGKGS+I
Sbjct: 91  VMIANAGIAIPHLSLEDKNEDIWTKVVGINLNGAYYTAQAAGHHFKKQGKGSLI 144


>SPBC1198.11c |reb1|SPBC660.01c|RNA polymerase I transcription
           termination factor Reb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 504

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 282 SIIQNVVNNLIIDKRRNXMEYCYKLWVGNGQXIVRKXF 395
           +II   V+N I+D+  +  ++C ++W G     +R  +
Sbjct: 247 AIISQEVHNFIMDQGWSEYQFCNQIWAGKCPKTIRMFY 284


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 27.1 bits (57), Expect = 3.7
 Identities = 16/62 (25%), Positives = 17/62 (27%)
 Frame = +1

Query: 724 PPXXXXXPPXPXLPXPPXXPXXXXXXPXPXXPPXXXXXXPXXXPXXXPXXPXXXPXPXXP 903
           PP     P  P +P PP  P        P  PP              P  P     P  P
Sbjct: 577 PPVAPVAPEVPSVPQPPVAPVVPEAPSVP-QPPVAPVAPEVPSVPQRPAVPVVPEAPSVP 635

Query: 904 XP 909
            P
Sbjct: 636 QP 637


>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1224

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +3

Query: 183 NQDLEEXLYNSILTGDYDSAVRQSLE 260
           + DLE+ +  ++LTGD  SAV+  LE
Sbjct: 551 DSDLEKNITEALLTGDVLSAVKACLE 576


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 11/34 (32%), Positives = 18/34 (52%)
 Frame = +3

Query: 285 IIQNVVNNLIIDKRRNXMEYCYKLWVGNGQXIVR 386
           +++++  NL I    N +EY   LW  NG  I +
Sbjct: 447 VLKDIFFNLQIGVTFNILEYLRHLWSNNGDAIAK 480


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 14/47 (29%), Positives = 15/47 (31%)
 Frame = +1

Query: 754 PXLPXPPXXPXXXXXXPXPXXPPXXXXXXPXXXPXXXPXXPXXXPXP 894
           P +P PP  P        P  PP      P   P   P  P   P P
Sbjct: 415 PPVPTPPSLPPSAPPSLPPSAPPSLPMGAP-AAPPLPPSAPIAPPLP 460


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 25.8 bits (54), Expect = 8.6
 Identities = 15/49 (30%), Positives = 16/49 (32%), Gaps = 1/49 (2%)
 Frame = +1

Query: 724 PPXXXXXPPXPX-LPXPPXXPXXXXXXPXPXXPPXXXXXXPXXXPXXXP 867
           PP      P P  +P PP  P      P P  PP      P   P   P
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAP-IMGGPPPPPPPPGVAGAGPPPPPPPPP 783


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,058,600
Number of Sequences: 5004
Number of extensions: 30362
Number of successful extensions: 122
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 88
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)