Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L16
         (876 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014297-842|AAF54310.1|  587|Drosophila melanogaster CG11966-PA...    29   6.4  
U31961-5|AAA84404.1|  424|Drosophila melanogaster protein ( Dros...    29   8.4  
AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-P...    29   8.4  

>AE014297-842|AAF54310.1|  587|Drosophila melanogaster CG11966-PA
           protein.
          Length = 587

 Score = 29.5 bits (63), Expect = 6.4
 Identities = 22/76 (28%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = -2

Query: 791 GGFXHTAQXGANDLHRTEIPTA*AMRKRHASRREKGGQVSGKRQGRNRRAHEGAXQGETP 612
           G + HT          +E+ T     KR  S++ K  Q   ++Q + ++  +G  Q  TP
Sbjct: 450 GNYPHTTTASTTG---SEMRTGAPKAKRSRSQK-KSNQQQQQQQQQQQQQGDGGGQPTTP 505

Query: 611 GIFIVL-SGFATSDLS 567
            +  +  SGF+ SDLS
Sbjct: 506 QMSAISPSGFSASDLS 521


>U31961-5|AAA84404.1|  424|Drosophila melanogaster protein (
           Drosophila melanogasterbithorax complex (BX-C), complete
           sequence. ).
          Length = 424

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 296 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 391
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 340 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 371


>AE014297-2268|AAF55361.3|  417|Drosophila melanogaster CG10349-PA
           protein.
          Length = 417

 Score = 29.1 bits (62), Expect = 8.4
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +2

Query: 296 ESANARGEAVCVLGALPLPRSLTRCARSFGCG 391
           ES      +VC  G LP+P  L  C +  GCG
Sbjct: 333 ESYQTTSASVCHSGWLPVPGHLAGCGQRRGCG 364


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,798,609
Number of Sequences: 53049
Number of extensions: 758613
Number of successful extensions: 1767
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 4250176164
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)