Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_L07
         (862 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.        31   4.1  
BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.        31   4.1  
AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.       31   4.1  
BC031055-1|AAH31055.2|  571|Homo sapiens HDAC2 protein protein.        30   9.4  

>BC064495-1|AAH64495.1|  299|Homo sapiens RCOR1 protein protein.
          Length = 299

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -1

Query: 700 EKGGQVSGKRQGRNRRAARGS 638
           EKG +VSGKR+GRN  AA  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASAS 23


>BC051003-1|AAH51003.1|  293|Homo sapiens RCOR1 protein protein.
          Length = 293

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -1

Query: 700 EKGGQVSGKRQGRNRRAARGS 638
           EKG +VSGKR+GRN  AA  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASAS 23


>AF155595-1|AAF01498.1|  482|Homo sapiens CoREST protein protein.
          Length = 482

 Score = 31.5 bits (68), Expect = 4.1
 Identities = 14/21 (66%), Positives = 16/21 (76%)
 Frame = -1

Query: 700 EKGGQVSGKRQGRNRRAARGS 638
           EKG +VSGKR+GRN  AA  S
Sbjct: 3   EKGPEVSGKRRGRNNAAASAS 23


>BC031055-1|AAH31055.2|  571|Homo sapiens HDAC2 protein protein.
          Length = 571

 Score = 30.3 bits (65), Expect = 9.4
 Identities = 15/33 (45%), Positives = 18/33 (54%)
 Frame = +1

Query: 616 YQAFPPGSSLVPLSCSDPAAYRIPVRLSPFGKR 714
           Y+AFP    L+P +C  P  YR  V LS F  R
Sbjct: 26  YRAFPAPPPLLPPACPSPRDYRPHVSLSHFLSR 58


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,717,747
Number of Sequences: 237096
Number of extensions: 2199544
Number of successful extensions: 10578
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10267
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10576
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 10984231046
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)